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Information for unigene UN22185
| FASTA Sequence |
| Unigene ID: UN22185 | Length: 833 |
| SNP | CCGCTTAGGTTTCATCATAAACCCTAAGAGAGATTCTCCTCTCTGCATCCTCCGTCGTCTCTTACAACTCTCCTCTCTGCAATTTG
CTTGCGACTCGTATCACTTGCAGAGGAACTTGTAAGGAGGAGACAAGATGAGATTGGTCAAGTGTTGGTTTTGCTCTTCTACGATA
TATCCTGGACATGGTATTCAGTTTGTCCGCAACGATGCAAAGATTTTCCGGTTCTGTAGGTCTAAGTGCCACAAGAACTTCAAGAT
GAAGAGGAACCCTCGTAAAGTGAAGTGGACTAAAGCCTACAGAGCTGCACACGGAAAGGACATGACTCAGGATAAAACTTTTGAGT
TTGAGAAGAAGAGAAACAGACCCGAGAGGTATGATAGGAACGTTACGGAGGATACTCTCAAGGCCATTAAGAAGATTGATAAGATC
AGAAGCACTAGAGAAGCTGACCACATCAGCAAGAGGTTGAAGCCAAACAAACAGAAGGCATTAAAGAGTGATCTCAAGGAGATAGA
CCAGCACATTAATTTGATCAAGGCACCAGGTTCGCAGCAACAAGACTCAGAGAAGGTGAAAGTTATGGTCTCCAGCAACAAGTCTG
TTCAAAACGAAGCCATGGAAGAGTGATTATGTGGTAACATTTGAGGATCCATTTAGAAGATGTATTCACTATACTCCAAAGCTGGT
GTTGTCTTTTAAAAAAAGAGTTTTAAGATTGTTTTGTTTTTGCAATGTATTAAATTACCTGATACAACGAAAACAAATTTAAGTAG
TATTTTATGTCTGCCTTAAGGATATTTCTTTTCTTTTCATCTTGAAAATATACTTTCAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881985 hypothetical protein ARALYDRAFT_483616 [Arabidopsis lyrata subsp. lyrata] | 711 | 6e-073 |
| NP_182013 large subunit ribosomal protein L24e [Arabidopsis thaliana] | 678 | 4e-069 |
| XP_002312895 predicted protein [Populus trichocarpa] | 654 | 3e-066 |
| XP_002328175 predicted protein [Populus trichocarpa] | 646 | 2e-065 |
| ACU13961 unknown [Glycine max] | 634 | 5e-064 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22165 Probable ribosome biogenesis protein RLP24 | 678 | 2e-070 |
| Q99L28 Probable ribosome biogenesis protein RLP24 | 464 | 1e-045 |
| Q9UHA3 Probable ribosome biogenesis protein RLP24 | 463 | 2e-045 |
| Q3SZ12 Probable ribosome biogenesis protein RLP24 | 461 | 3e-045 |
| Q6P6G7 Probable ribosome biogenesis protein RLP24 | 461 | 3e-045 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DGX5 AT2G44860 protein | 678 | 3e-069 |
| A9PAC6 Predicted protein | 654 | 2e-066 |
| B9MYJ4 Predicted protein | 646 | 2e-065 |
| C6SXI8 Putative uncharacterized protein | 634 | 4e-064 |
| A5C6X2 Putative uncharacterized protein | 632 | 6e-064 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G44860.1 60S ribosomal protein L24, putative | 703 | 2e-074 |
| AT2G44860.2 60S ribosomal protein L24, putative | 703 | 2e-074 |
| AT3G53020.1 STV1 (SHORT VALVE1); structural constituent of ribosome | 184 | 3e-014 |
| AT2G36620.1 RPL24A (ribosomal protein L24); structural constituent of ribosome | 183 | 4e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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