RadishBase

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Information for unigene UN22196

FASTA Sequence

Unigene ID: UN22196	Length: 2027	SSR
AACATCCAGCCAAGACAATATCATTACAAAGAAACCTAAAACTTATTCCAAAACAACGAGGTGAGATTTCATATTAATTCTTCCGA TATGTATTGAATAGTGGGAACTAGCTTTGACACAACATGAACAAACCAGCAAGAAATATCATTATCATATGGTAGATCCATATTTT TAGGCGTTTGAAATTCATGTCTTATGCTAAAACAAAAAGAAAGTAAACCATAGCAACAAAACACAACAAATCATGAAACAAGATCA TCCACGGAAATGAATATCACGACAAGAGAGGCAAACAATCAACTGATGTTTTTAAACTCTTGTCATGTGAAACTGATCTAGTGCTC TTTGACAGGTGCAGATTTTGGTGGAGGAGGAAGGTTCTCGACTGTAACAGTGAGCTTCATGCCTTTAAAACAACCACCCCTTCCGT CAAGTAGATAGTACTGTTTGGTGACATTGAGAGGGACAATGTCTCTCCCAGCTCCACGTGTATAGTTTCGGATCGGATGGTCGGAG ATACATCTCTCGTAGTCGGTCTTGTTTACTTCAAGAATGTTGTGTTGGTCTCTGTAGTACACGAAATAGAGCCAATCTCCAAGGTA GAAATGCTTTCCCTGAACCCAGGTGGTATAGTCGATGTTTGGATTCCAAAACTTTTTGTCGCCAACTAAATACTTCTTTGCCGTCA CTTCCGGCACCGGCGCTGCCACTAGTAAAGCAAGTACTGCTGCCGCAATCAACACCGTGAATCTCGCCATCTTTTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTTAAAAAAATAATGGACAGTGTAGCACTCTTCTTCACCGGTGCT CTCGTAGCCGGCGGTATCTACTGGTTCCTCTGCGTACTCGGACCAGCTGAGTGTAAAGGCAAACGAGCCTTGGATCTATCGGGCGG CTCCATCTCCGCCGAGAAAGTTCAAGACAACTACAAACAGTACTGGTCTTTCTTCCGCCGCCCCAAAGAGATCGAAACCGCCGAGA AAGTCCCTGACTTCGTCGACACGTTCTACAACCTCGTCACCGACATCTACGAGTGGGGATGGGACAGTCCTTCCACTTCTCCCCTT CCATCCGTGGCAAATCCCACCGCGACGCCACGCGCCTCCACGAAGAGATGGCCGTAGATCTGATCCAAGTGAAACCGGGCCATAAG ATCCTCGACGTCGGATGCGGCGTCGGTGGTCCGATGCGCGCGATTGCATCTCACTCGCGAGCCAACGTTGTCGGGATCACGATCAA CGAGTACCAGGTGAAGAGAGCGCGTGACCACAACAGGAAAGCGGGACTCGACGCGCTCTGCGAGGTCGTGTGCGGCAACTTCCTCC AGATGCCGTTCGATGATAACACCTTCGACGGTGCGTACTCGATCGAATCGACGTGTCACGCGCCGAAGCTTGAAGAAGTCTACGCG GAGATCTACAGGGTGTTGAGCCCGGATCTCTATACGTGTCGTACGAGTGGGTCACGACTGCTAAGTTCAACGCTGAGAATGAGGAA CACTTGGAGGTCATCCAAGGGATCGAGAGAGGAGACGCGCTTCCTGGGCTTAGGGCTTATTCCGACATAGCTGAGACGGCGAAGAA GGTTGGGTTCGAAGTTGTCAAGGAGAAGGATCTGGCGGCTCCGCCGGCTGAGCCGTGGTGGACTAGGCTTAAGATGGGTCGGCTAG CTTACTGGAGGAACCACATTGTGGTTCAGGTTTTGTCTGCTGTCGGAGTTGCGCCTAAAGGAACCGTTGATGTTCACGAGATGTTG TTTAAGACAGCTGATTTCTTGTCCAGAGGAGGCGAAACTGAAATTTTCTCTCCGATACATATGATTCTCTGCCGGAAACCTATTTC TTGAAATAGAATCTTCTTCCGATCTCAGTTTGTTTTTAATTTTTGTTTTCTAATGGATCTTCCATCATGCTTGATCTGTCAATGTA CTCTTTTAGATTTTTAAAACCGTGTTTAATCTTAATTTGGTATTACTGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CAA65749 lamin [Brassica oleracea]	707	7e-072
NP_173458 24-methylenesterol C-methyltransferase 2 [Arabidopsis thaliana]	664	7e-067
AAM63753 sterol-C-methyltransferase [Arabidopsis thaliana]	664	7e-067
AAM91592 24-sterol C-methyltransferase [Arabidopsis thaliana]	661	1e-066
XP_002893098 hypothetical protein ARALYDRAFT_472261 [Arabidopsis lyrata subsp. lyrata]	660	2e-066

Swiss-Prot top hits (Blast detail)	Score	e value
Q39227 24-methylenesterol C-methyltransferase 2	664	3e-068
Q39131 Lamin-like protein	613	2e-062
Q94JS4 24-methylenesterol C-methyltransferase 3	611	4e-062
O82427 24-methylenesterol C-methyltransferase 2	572	1e-057
Q6ZIX2 Cycloartenol-C-24-methyltransferase 1	369	4e-034

TrEMBL top hits (Blast detail)	Score	e value
Q39370 Lamin	707	5e-072
B0FDL8 24-sterol C-methyltransferase	637	6e-064
B9R8F7 S-adenosyl-l-methionine:delta24-sterol-C-methyltransferase, putative	625	1e-062
D2D5G3 Sterol 24-C methyltransferase 2-1	622	3e-062
O24154 S-adenosyl-methionine-sterol-C-methyltransferase	619	7e-062

Arabidopsis top hits (Blast detail)	Score	e value
AT1G20330.1 SMT2 (STEROL METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase	664	2e-069
AT5G15350.1 plastocyanin-like domain-containing protein	613	2e-063
AT1G76090.1 SMT3 (STEROL METHYLTRANSFERASE 3); S-adenosylmethionine-dependent methyltransferase/ sterol 24-C-methyltransferase	611	3e-063
AT4G12880.1 plastocyanin-like domain-containing protein	594	3e-061
AT3G01070.1 plastocyanin-like domain-containing protein	457	2e-045

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	1			8%


9	3			25%


6	4			33%


7	2			17%


11	2			17%

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