 |
Information for unigene UN22235
| FASTA Sequence |
| Unigene ID: UN22235 | Length: 1666 |
SSR | SNP | GTTCCTATAGACCCATTTTCCTCCTCTCATTCCTCATTTTATTTTTATTTCAAGAAATAACATCTTTTATGTCACCACACAATAAC
CCATAAAATCAAAAATCGTTACCCACATTCTCTCATTCTATCCTAATCCTCATCACTCAAAACAGAGTGCTTAGGCGGAGAAGAAG
AGGAAGAGGAACCAAACATCAAACAACAATGGCTGTCTCAACAATCTACTCAACACAAGCTCTTAACTCAACTCATTTCTTAACCT
CTTCCCCTTCTTCCACCTCCTCCTCCTCAAAACAAGTCTTCTTCTACCGTCGTCAAACCAACCGTAGATTCAACACCATCATCACT
TGCGCTGCACAACAAACCGTCGTGATCGGACTCGCTGCCGACTCCGGATGCGGCAAAAGTACTTTCATGCGGAGGCTGACAAGTGT
CTTCGGTGGAGCCGCCGAGCCACCGAAAGGAGGGAACCCTGACTCCAACACACTCATCAGTGACATGACCACCGTGATCTGTCTCG
ATGATTACCATTCTTTGGACAGAACCGGTCGCAAAGAGAAAGGAGTCACCGCTTTGGACCCACGCGCCAATGACTTTGATCTCATG
TATGAGCAAGTCAAAGCTCTTAAGAGTGGTATCGCCGTCGAGAAACCTATTTATAATCACGTCACTGGACTTCTTGACGCACCTGA
GCTTATTCAGCCTCCCAAGATTCTCGTCATCGAAGGTCTTCATCCAATGTTTGATGAGAGAGTAAGAGACTTGTTGGACTTCAGTA
TCTACCTAGACATTAGCAATGAGGTCAAATTTGCTTGGAAAATCCAGAGGGACATGGCTGAGAGAGGTCACAGTTTAGAGAGCATC
AAAGCAAGTATCGAAGCACGAAAGCCCGATTTCGATGCATTCATCGACCCGCAAAAGCAGTACGCGGATGCGGTAATAGAAGTGCT
TCCAACGCAGTTGATTCCAGATGACAATGAAGGCAAAGTGTTGAGAGTGAGGCTGATAATGAAGGAAGGTGTTAAGTACTTCAGCC
CGGTTTATCTATTCGATGAAGGTTCTACCATCTCGTGGATCCCTTGTGGTCGCAAACTCACCTGCTCGTACCCTGGCATCAAGTTC
AACTACCAACCTGATTCCTACTTCGACAATGAGGTTTCGGTTGTGGAGATGGATGGGCAATTCGATAGACTTGACGAGCTAATTTA
CGTGGAGAGCCATCTGAGCAACCTCTCGACCAAATTCTACGGCGAAGTGACTCAACAAATGCTCAAACATGCTGACTTCCCTGGTA
GCAACAATGGAACTGGTCTTTTCCAGACCATTGTTGGATTGAAGATCAGAGATCTCTATGAGCAGCTCATTGCCAACAAAGCCACT
GCTCCTTCAGAAGCTGCTAAAGCCTAAAGCAAATATAAGCAAAACAGAACGCGTCGATAAACCCATTGGTTGTTTCTTCTTTCTTT
CTTTCTTTCTTTGTTTCCCGCGGATTTTCATGGCGAAAAGGACGGTGTTGCTTGTTTTGTAATTTGTGTGGAGATATAAAAAGAAA
AGCCCGTAATGTAGAGAATTTATTAGCAGAGCAAAAGTTTTTTTTTTCTGAGACTGGTCAAAGTTAACGATTGTATCATCTTATAA
TATAGATTCTATTATAAGATGATCAACTAATC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890967 hypothetical protein ARALYDRAFT_890765 [Arabidopsis lyrata subsp. lyrata] | 1889 | 5e-209 |
| NP_174486 phosphoribulokinase [Arabidopsis thaliana] | 1887 | 8e-209 |
| XP_002326572 predicted protein [Populus trichocarpa] | 1770 | 3e-195 |
| XP_002303455 predicted protein [Populus trichocarpa] | 1754 | 2e-193 |
| ACJ84919 unknown [Medicago truncatula] | 1742 | 5e-192 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P25697 Phosphoribulokinase, chloroplastic | 1887 | 3e-210 |
| P26302 Phosphoribulokinase, chloroplastic | 1722 | 4e-191 |
| P27774 Phosphoribulokinase, chloroplastic | 1705 | 4e-189 |
| P09559 Phosphoribulokinase, chloroplastic | 1664 | 2e-184 |
| P19824 Phosphoribulokinase, chloroplastic | 1408 | 1e-154 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9MUA4 Phosphoribulokinase | 1770 | 2e-195 |
| B9GZT5 Phosphoribulokinase | 1754 | 1e-193 |
| B7FJJ0 Phosphoribulokinase | 1742 | 3e-192 |
| Q6Z8F4 Phosphoribulokinase | 1735 | 2e-191 |
| Q8GRU9 Phosphoribulokinase | 1735 | 2e-191 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G32060.1 PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding | 1904 | 3e-213 |
| AT3G27440.1 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative | 195 | 4e-015 |
| AT3G27190.1 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative | 186 | 5e-014 |
| AT1G55810.1 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative | 171 | 3e-012 |
| AT1G55810.3 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative | 171 | 3e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
