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Information for unigene UN22268
| FASTA Sequence |
| Unigene ID: UN22268 | Length: 1034 |
SSR | SNP | GGGGGGAATGGTCAGATAGATCCTGAAAGAACTTAAAAACCTAACACCAAGAGAGTCCGTTTTATCATCAATAAGATTCTCTGTCT
CTCCGATCCTCGTCGCTCTGAAGAAGAATCTCTGAGACCACTAACTCCAATGGCGGAATCTGCAGCTGCTCAAACTCAATCGCTCT
CTGAGCAATATCATTTGGAGAAAGAAGTGAAGCAAGACACAAGTGCTAAGCCTGTCCCTGTCGAGGTTGCTCCAGAGGTTACTACT
CAAGCTGAAGAGGTCAGCACCGACAAAGCCGGCGAAGAATCTCCTGCTGTTGAGGTTGAGGACAAGTCTGAGTCTCCTCCTGCTAC
TTCTGAAGAGGCTCCTGCTGTGGCAGCGGAAGACAATGCTGATGAGACTCCTGCTGCTGCTGCTGAAGAAAGCAATGACGAGGAGA
ACGCTAGTGAAGAAGTTGCCGAGGAGACTCCTGATGAGATCAAGCTTGAGACCGCTCCTGCTGATTTCCGTTTCCCGACAACAAAC
CAAACAAGGCATTGTTTCACTCGTTACATTGAATATCACAGATGTGTAGCTGCTAAGGGTGACGACGCTCCAGAATGTGATAAGTT
TTCAAAGTTCTATCGATCCCTGTGCCCCGGCGAATGGGTTGATAAGTGGAACGAGCAAAGAGAGAATGGAACTTTCCCTGGTCCTC
TCTAAAGATACTCCTGCCTCAAGAAGAATCCTCTTTTGATGTTACCTTCATAATGTCGCTCCAATTACACTGCAGAGTTTAATAAG
ATTTTACTGAACCAGCACTTCTGGTTCTTCATCATAAGATGTGAGAATTTAACAACTATAATCTCAAATTTTCTTTTCTTTTATCT
ATATGCTCAATTCAAGTTTTGAGGATCTTCTGATTCTGATATGTTGTTCTGACTTATTCTATGCTTGAATTCTTAGTACCGGAGAC
CATAAGAAAATGGTATTATCATTCATTACCAAAAAGCCAAAAACTGTTTGATTACATCTGATTCATTCATCAGAAGTTGGTTTTCG
CT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890515 hypothetical protein ARALYDRAFT_889753 [Arabidopsis lyrata subsp. lyrata] | 780 | 9e-081 |
| NP_173661 cytochrome C oxidase 6B [Arabidopsis thaliana] | 779 | 1e-080 |
| AAM63485 cytochrome c oxidase subunit, putative [Arabidopsis thaliana] | 776 | 3e-080 |
| ABK96664 unknown [Populus trichocarpa x Populus deltoides] | 546 | 1e-053 |
| XP_002307362 predicted protein [Populus trichocarpa] | 546 | 1e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O94581 Cytochrome c oxidase subunit 6B | 272 | 3e-023 |
| P14854 Cytochrome c oxidase subunit 6B1 | 224 | 1e-017 |
| Q5RCT0 Cytochrome c oxidase subunit 6B1 | 222 | 2e-017 |
| P00429 Cytochrome c oxidase subunit 6B1 | 217 | 8e-017 |
| Q7YRK6 Cytochrome c oxidase subunit 6B1 | 217 | 8e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9S7L9 Putative cytochrome c oxidase subunit | 779 | 8e-081 |
| Q8LCP1 Cytochrome c oxidase subunit, putative | 776 | 2e-080 |
| A9PJW1 Putative uncharacterized protein | 546 | 9e-054 |
| B9H706 Predicted protein | 546 | 9e-054 |
| A9P8C6 Putative uncharacterized protein | 543 | 2e-053 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G22450.1 COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase | 779 | 5e-083 |
| AT5G57815.1 cytochrome c oxidase subunit 6b, putative | 374 | 4e-036 |
| AT4G28060.1 cytochrome c oxidase subunit 6b, putative | 355 | 7e-034 |
| AT1G32710.1 cytochrome c oxidase subunit VIb family | 166 | 6e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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