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Information for unigene UN22308
| FASTA Sequence |
| Unigene ID: UN22308 | Length: 928 |
SSR | SNP | GGAACCACGTCGTCGTTGGCGTCGACACAAAGCCCAACGTTTACGTCTCTCTCTCTCTGAGTCGCGCTCCTCCTCACCGACGAAGA
TCGCGGCCGTATTCTCTATTCACAACTAGCGGTAGTTTCCGAGATCAACCATGAATCCTGAATATGACTATCTGTTCAAGCTTTTG
CTCATTGGTGATTCTGGTGTTGGCAAGTCATGCTTGCTTCTTAGGTTTGCTGATGATTCCTACCTGGATAGCTACATCAGCACCAT
TGGTGTTGACTTTAAAATCCGCACAGTTGAACAAGATGGAAAGACCATCAAACTCCAGATTTGGGATACGGCTGGTCAAGAACGTT
TCAGAACCATCACTAGCAGTTACTACAGAGGAGCTCACGGCATCATTGTGACTTATGATGTAACAGACCAAGAAAGTTTCAACAAT
GTCAAGCAATGGCTAAATGAAATCGACCGCTACGCCAGTGAGAATGTGAACAAGCTGCTGGTTGGCAACAAAAACGATCTCACTTC
ACAGAAAGTTGTCTCCACTGAAACTGCCAAGGCTTTCGCTGATGAACTTGGGATCCCATTCCTGGAAACAAGTGCCAAGAATGCTA
CCAATGTAGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACAAGAATGGCGAGTCAACCTGCAGGAGGGGCCAAGCCAGCA
ACGGTCCAGATCCGAGGACAACCAGTAAACCAACAATCAGGCTGCTGCTCTTCTTAATTCGCTCTGTGAAAAACTTATTAACCATA
TGTTATCTCCTTCGTATGCATATGTAAGACATCTGAACATCGGTCTTCTTTCATCTGGTCTTCTTTGGTTTTTCAGTTTATGTCCA
AAATTTTATAAATTCTTTGTAATCTACTTGCAATAATAAACTTCTCAGTAAAAGTTTTCATTCATACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568678 RAB GTPase-1A [Arabidopsis thaliana] | 1023 | 5e-109 |
| ABD65068 GTP-binding protein, putative [Brassica oleracea] | 1020 | 1e-108 |
| NP_193486 RAB GTPase homolog 1C [Arabidopsis thaliana] | 1011 | 1e-107 |
| ABD64935 GTP-binding protein, putative [Brassica oleracea] | 1011 | 1e-107 |
| AAL31108 AT4g17530/dl4800c [Arabidopsis thaliana] | 1002 | 1e-106 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q05737 GTP-binding protein YPTM2 | 946 | 2e-101 |
| P28188 Ras-related protein RABD2A | 905 | 1e-096 |
| P40392 Ras-related protein RIC1 | 897 | 9e-096 |
| Q39571 GTP-binding protein YPTC1 | 843 | 2e-089 |
| P62822 Ras-related protein Rab-1A | 831 | 4e-088 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FPJ4 AT5g47200 | 1023 | 4e-109 |
| Q2A9H3 GTP-binding protein, putative | 1020 | 8e-109 |
| Q2A9V7 GTP-binding protein, putative | 1011 | 9e-108 |
| Q9SEH3 AT4g17530/dl4800c | 1011 | 9e-108 |
| Q8W4S8 AT4g17530/dl4800c | 1002 | 1e-106 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47200.1 ATRAB1A; GTP binding | 1024 | 2e-111 |
| AT4G17530.1 ATRAB1C; GTP binding | 1012 | 4e-110 |
| AT1G02130.1 ARA-5 (ARABIDOPSIS RAS 5); GTP binding | 906 | 8e-098 |
| AT3G11730.1 ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding | 789 | 3e-084 |
| AT5G59840.1 Ras-related GTP-binding family protein | 615 | 4e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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