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Information for unigene UN22334
| FASTA Sequence |
| Unigene ID: UN22334 | Length: 1116 |
| SNP | CGCCAGTTGAAATCATTTATAAATAACCATTATCTTCCACTACATAAATGGATAGTGTACTGTTACTTGGCATTTATCAAAGTGAA
AAATGATCTAATGTCCCATACTTCGTATCATTATAAAAATTGAAAACATGACTTCGAGGCTGATACAAAAAAAAAAACAACACTTC
TAAGCTCAAATGAATATATCCCTACTTGGAAATTCTTATTGATTCGCTTCTGTTTTTCTTTCTCCAACAAATCCTCTCAAGCCGAC
CCAATTCATTCTCCAAAAACATTAAACTTACTTTGCTCTAGGATGCTTGGTCACTTTTCTTGTAAACGCAAACTCTCCAAACTTAT
GCCCAACTTTCCCCTCTGTGATCTTACAACGCACATGAGTTTTGCCATTGTAGATCCTCACCGACGAATCAACATACTCTGGCAGA
ATCGTCGACCTCCTTGACCATATTTTCCTGTTCAGAGCTGCGTTTTTCTTCTTCATCAAGAAGGCGTCAACGAACGGATCTTTCCA
TACAGATCGGCTCACCATCTTATTGCCTTTCTTCTCATCTTCTGTACCTTCGACCAAAGATAACGGCAAGCTTGGCCATTCTTTTG
CAGCATCCACACGGATGTTACACCCATTCAACTCCTGTCCATCCATAGCTGAAATAGCAGACTTGGCAGACTCCTCACTTGTGAAA
TTGACAAATCCATAACCCCTTGACCTTCCTGTCACTTTGTTTGTCATGACTCTTGCCTCTGTCACTCCATTGAAGGTAGAGAAAGC
ATCCTTCAAGGAATGGTCGTCAGTTCCGGGCGACAGGCCACCAATGAAAAGTTTTGTGGACATGTAGCGGAGCATTGATGTCACTG
GAACATTTCTGTTCTGTAAAACCCCGAGTTTGGCGCAGACAGCCATTTTTTCGATGTCTGGAAATCGATAGCTGAGATCACGTTCG
TCGTCGATTTTTGGGGGCAGATGGGTGACAACAAGTTTACACTCGTTAGGGCTTGTCGCGATCTGAACCAAGCCCGGTTCTATCAA
CAGGTCTCATCTGTCTCCCTATTTTCAATTGGTTTCTACCGGTCTTGTCTTTTTTTGGTTTACGTATAATCAACCCAGCTATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAA54951 ribosomal protein S19 [Arabidopsis thaliana] | 885 | 7e-093 |
| BAA97166 40S ribosomal protein S19 [Arabidopsis thaliana] | 883 | 1e-092 |
| NP_568681 small subunit ribosomal protein S19 [Arabidopsis thaliana] | 878 | 5e-092 |
| AAB71417 glycine-rich RNA-binding protein PsGRBP [Pisum sativum] | 328 | 3e-028 |
| NP_189025 glycine-rich RNA-binding protein 4 [Arabidopsis thaliana] | 310 | 3e-026 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P39697 40S ribosomal protein S19, mitochondrial | 878 | 2e-093 |
| Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial | 305 | 5e-027 |
| P27527 Ribosomal protein S19, mitochondrial | 297 | 5e-026 |
| Q43472 Glycine-rich RNA-binding protein blt801 | 207 | 1e-015 |
| Q03878 Glycine-rich RNA-binding protein | 202 | 5e-015 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| P93486 Glycine-rich RNA-binding protein | 328 | 2e-028 |
| Q9LIS2 AT3g23830/F14O13_2 | 310 | 2e-026 |
| A8MSB9 Uncharacterized protein At4g13850.3 | 305 | 9e-026 |
| Q3EA40 Putative uncharacterized protein At4g13850.2 | 305 | 9e-026 |
| Q8LDS0 Glycine-rich RNA binding protein, putative | 305 | 9e-026 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47320.1 RPS19 (RIBOSOMAL PROTEIN S19); RNA binding | 879 | 1e-094 |
| AT3G23830.1 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 310 | 1e-028 |
| AT3G23830.2 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 310 | 1e-028 |
| AT4G13850.1 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding | 305 | 5e-028 |
| AT4G13850.2 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding | 305 | 5e-028 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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