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Information for unigene UN22387

FASTA Sequence
Unigene ID: UN22387Length: 892  SNP
GGGCATTTCACTCGTCTCGCCGCAAGCCTTTCTCTGTGACATTCATCTGAGGTGAAGAAATGAAGCACAACAATGTCATCCCCAAT
GGTCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACTTGGTTCAATCAGCCTGCCAGGAAAACAAGGAGAAGAGTTGCGAGACA
AAAGAAGGCTGTGAAGATCTTCCCTCGTCCTACTGCTGGACCTCTCCGCCCTGTTGTGCATGGTCAGACTCTCAAGTACAACATGA
AAGTCAGAACCGGTAAAGGTTTCACTCTTGAAGAGCTCAAGTCTGCTGGAATCCCCAAGAAGTTGGCACCAACCATCGGTATTTCT
GTTGACCATCGTCGCAAGAACAGATCTCTCGAGGGTCTTCAGTCCAATGTCCAGAGGCTCAAAACCTACAAGGCTAAGTTGGTCAT
CTTCCCTCGTCGTGCCAGGAAGACCAAGGCTGGTGATTCTACTGCAGAAGAGTTGGCCAATGCCACTCAAGTCCAAGGAGACTACA
TGCCAATAGTCCGTGAGAAGCAAGCAACTGAGCTTGTGAAGCTTACCGCTGAGATGAAATCGTTCAAGGCTTATGACAAGATCCGT
CTAGAGCGCACAAACAAGAGACACGCCGGTGCTAGAGCCAAGAGAGCTGCTGATGCTGAGAAGGAAGAGAAGAAGTGAGACAACTC
CCTTAGAAGAAACTCTTTTTATCTTGTCATCGTTTGAATCTCAGTTTTTGTGTATCAGACTGGTTTTTTCTTCAGATTTTTGCAAT
TACTTATCTGGATTTATGGAAAACATCCTTCTACATTATCTTTCTACTTCTTGAAGTCTTGTCTTTCTTTACTACATTAAGACACG
TCCTTTGGTTAGGCATTCTACATTTTCTCAAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
P41128 RecName: Full=60S ribosomal protein L13-1; AltName: Full=Cold-induced protein C24A10333e-110
ABL97945 cold induced protein [Brassica rapa]10307e-110
P41129 RecName: Full=60S ribosomal protein L13-2; AltName: Full=Cold-induced protein C24B10291e-109
XP_002877641 ATBBC1 [Arabidopsis lyrata subsp. lyrata]10056e-107
NP_190470 60S ribosomal protein L13-1 [Arabidopsis thaliana]10048e-107

Swiss-Prot top hits (Blast detail)Scoree value
P41128 60S ribosomal protein L13-110331e-111
P41129 60S ribosomal protein L13-210294e-111
P41127 60S ribosomal protein L13-110043e-108
Q9FF90 60S ribosomal protein L13-39677e-104
Q9SMT4 Putative 60S ribosomal protein L13-28791e-093

TrEMBL top hits (Blast detail)Scoree value
A1YMY6 60S ribosomal protein L1310305e-110
B9DGA4 60S ribosomal protein L1310045e-107
B9STE6 60S ribosomal protein L139534e-101
B7FGS0 60S ribosomal protein L139491e-100
B9S1X7 60S ribosomal protein L139482e-100

Arabidopsis top hits (Blast detail)Scoree value
AT3G49010.1 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome10052e-109
AT3G49010.2 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome10052e-109
AT3G49010.3 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome10052e-109
AT3G49010.4 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome9873e-107
AT5G23900.1 60S ribosomal protein L13 (RPL13D)9685e-105

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  36%
 
104  36%
 
121  9%
 
82  18%

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