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Information for unigene UN22422
| FASTA Sequence |
| Unigene ID: UN22422 | Length: 979 |
SSR | | GGAGTCATCAAAATCCAATCTCTCTCTCTCTCTCTCTCCGTGAATCTCTGTCCTCGATCGACAACGACGACGACGAGCAACGCTCT
AGCTCCTCCGGAGAACCAAATTCCGTCGTAGATCTTATCAGGATGAGTAACGATCTTCTCGACATCGATCCTATCGACCTTCAATT
CCCTTTTGAATTGAAGAAGCAGATCTCTTCGTCTCTCTATCTGGCTAACAAAACCGACAATTATGTCGCCTTCAAGGTTAAAACGA
CGAATCCGAAGAAGTATTGTGTTAGGCCTAACACTGGTGTTGTTCTTCCGAGATCCTCTTCCGAAGTTCTAGTGACGATGCAAGCG
CAAAAGGAAGCTCCTGCTGATATGCAGTGCAAGGACAAGTTCTTACTTCAGTGTGTTATCGCCAGTCCCGGAGCCACTGCCAAGGA
AGTTACTCCTGAGATGTTTAGCAAAGAGGCAGGGCATCGAGTTGAGGAGACTAAATTGAGAGTTGTCTATGTTGATCCACCACGGC
CACCATCACCCGTTCGTGAAGGATCGGAAGAGGGCTCTTCTCCTAGAGCTTCTGTCTCTGACAGTGCCAACGTTTCTGATTTTACT
GCTGCTCCAAGATTTAGCGTGGACAGGCTTGAACCTCAGGAAAACTCATCTGAGGCGAGAGCTCTCATCACAAGGCTCACCGAGGA
AAAGAACTTTGCGCTTCAACTAAACAAGAAACTTCAACAAGAATTGGAGCAGTTGAAGCGTGAAAGCAAGAGGAGTCAGAGTGGTG
GTGGAATCCCGTTCATGTACGTTTTTTTGGGGGGATTAATCGGTTTAATCTTGGGATACATCATGAAGAGGACATGATCACGTTGA
ATTGATAAAACAAACCCCCCCCCACAAAGTCTCAAAAGTAGTTCGGACAAACCAAAAAGACATGAAAAAAAGAAAAATCAAATTGT
GTCGGAAAGGACATTCAGTTTTTTTTCTTGTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880160 hypothetical protein ARALYDRAFT_483647 [Arabidopsis lyrata subsp. lyrata] | 1066 | 6e-114 |
| NP_182039 VAP-like protein 12 [Arabidopsis thaliana] | 1054 | 1e-112 |
| NP_567101 vesicle associated protein [Arabidopsis thaliana] | 954 | 6e-101 |
| AAM63134 putative VAMP-associated protein [Arabidopsis thaliana] | 938 | 4e-099 |
| XP_002511657 vesicle-associated membrane protein, putative [Ricinus communis] | 863 | 2e-090 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60119 Vesicle-associated membrane protein-associated protein C16G5.05c | 200 | 7e-015 |
| Q9P0L0 Vesicle-associated membrane protein-associated protein A | 181 | 1e-012 |
| Q5R601 Vesicle-associated membrane protein-associated protein A | 181 | 1e-012 |
| Q16943 Vesicle-associated membrane protein/synaptobrevin-binding protein | 179 | 2e-012 |
| Q9Z270 Vesicle-associated membrane protein-associated protein A | 176 | 4e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SHC8 At2g45140 | 1054 | 1e-112 |
| Q8VZ95 At3g60600 | 954 | 4e-101 |
| Q8LDM1 Putative VAMP-associated protein | 938 | 3e-099 |
| B9RD68 Vesicle-associated membrane protein, putative | 863 | 1e-090 |
| B9GPC4 Predicted protein | 852 | 3e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G45140.1 PVA12 (PLANT VAP HOMOLOG 12); structural molecule | 1060 | 1e-115 |
| AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 960 | 4e-104 |
| AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 717 | 7e-076 |
| AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 702 | 4e-074 |
| AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein | 641 | 4e-067 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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