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Information for unigene UN22478
| FASTA Sequence |
| Unigene ID: UN22478 | Length: 920 |
SSR | | GGAGAAGAGGAAGCTCGTGTTGAGAGGAGGAAGAAGAAGAAGAAATATCGGTTCTTGGTTTGAGAATTCAATGGCGGTTTCTTCTG
TAACTTCGTTCTCATTGTCCTCTCTCGCCAATCCCACCAGACAGAAAGTCTCTCTGCTTTCATTGTTTCCATCTTCTTCTACTCAT
GTCAGCAGCACTGGATTTGGCTCCTCCGTCCTTAACAAACCTTCCTCCTTGTTCACGACTAAGATCTTTGCTGCTCCTGAAACCCT
AACTATCGATCAACCATCCTCTGAGGAATTCTCCGAGGTTCCAAGCTCTTCCTCCATCAATGTAGACGCAGATAAGATGGCGCCAA
AGCAGAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTATTATTGAGGACTCATGCAAGCAGATACTTGACGCTGCGAGGAAT
ACTAATGCCAAGACGATGGGTCCTGTTCCCTTGCCCACCAAGAAGCGTATTTACTGTGTTCTCAAGTCTCCCCACGTTCACAAGGA
CGCAATGTTCCACTTTGAGATCCGGACTCACCAGCGGATGATTGATATTCTCTACCCTACTGCTCAGACCATCGACTCCTTGATGC
AGCTGGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTGAATGCAAACAATGGGTGATGGGCGCTTGCATTTCATGAACAGA
CTGTTTCAGATCAACTACACTGCTTAGAACTTGTAAGCCATGTATCATCCTTTTGAGAGCCTATGTAATGAATATTATCTGGTCCT
TGTTGTTAATTGATGAACAAATTGCTGTAAGCAAGTTTAAAAAGATCTTTTTTTTTGTATTGTGTATTTACTAATTGTTTTGCTGT
CAACTGTTACAAATAAGTTCAATGTATTTTTTCTTTTGTACTTTAGTGGAATCCTTATTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAW22623 30S ribosomal protein S10-like [Brassica napus] | 806 | 7e-084 |
| ABL97980 30S ribosomal protein S10-like [Brassica rapa] | 806 | 7e-084 |
| ABB97026 unknown [Brassica rapa] | 730 | 5e-075 |
| NP_187919 30S ribosomal protein S10 [Arabidopsis thaliana] | 699 | 2e-071 |
| XP_002884945 hypothetical protein ARALYDRAFT_478688 [Arabidopsis lyrata subsp. lyrata] | 697 | 3e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LK61 30S ribosomal protein S10, chloroplastic | 699 | 8e-073 |
| Q9M4Y3 30S ribosomal protein S10, chloroplastic | 593 | 2e-060 |
| P17009 Cyanelle 30S ribosomal protein S10 | 346 | 7e-032 |
| B7K833 30S ribosomal protein S10 | 340 | 4e-031 |
| P51286 30S ribosomal protein S10, chloroplastic | 339 | 5e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A1YMX4 30S ribosomal protein S10-like | 806 | 5e-084 |
| Q5MD13 30S ribosomal protein S10-like | 806 | 5e-084 |
| Q2V615 Putative uncharacterized protein | 730 | 3e-075 |
| B9S9Q5 30S ribosomal protein S10, putative | 587 | 1e-058 |
| B9GFK3 Predicted protein | 570 | 1e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13120.1 30S ribosomal protein S10, chloroplast, putative | 700 | 6e-074 |
| AT3G47370.2 40S ribosomal protein S20 (RPS20B) | 118 | 2e-006 |
| AT3G45030.1 40S ribosomal protein S20 (RPS20A) | 118 | 2e-006 |
| AT3G47370.1 40S ribosomal protein S20 (RPS20B) | 118 | 2e-006 |
| AT3G47370.3 40S ribosomal protein S20 (RPS20B) | 118 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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