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Information for unigene UN22519
| FASTA Sequence |
| Unigene ID: UN22519 | Length: 905 |
SSR | SNP | GGGAATACAGAGCCTGGGACGAATTACTAGTTACGGTGTAGGAGAGCAGAGAAAAGTGTCCATGGCGACAATAGTCCAGTGTCTTT
CGTCATGTGCGACCCTCAATTCCAAATTCAAAGTCCTTTCTCTTAAGGGAGCTTCTTCTTCGTCGTCATCATCTCCAACTTCTTCT
TCCTTGTCCACTCGTCGTGGTGCGTCGGCGACTGTCTGCTCCTCCCTTGGCTTCTCTCAGAGTGTTTCTCAATGTGTCGCTTTCTC
CTCCGGGAATCTATGGGTGCAGAAGAATCCAGCGAGGCAATTGATTGTGTGTGAAGCAGCTCCGACGAAGAAAGCTGATTCAGCTG
CAAAGAGAGCTCGCCAAGCCGAGAAGAGGCGTGTTTACAACAAGTCTAAGAAATCTGAAGCCCGTACTCGTATGAAGAAGGTTTTG
GAAGCACTCGATGGGCTCAAGAAGAAACCAGATGCGCAACCTGACGAGATTGTTACCGTAGAGAAACTCATCGGAGAGGCTTATTC
TGCAATAGACAAAGCAGTGAAGGTTAGAGCGCTACACAAGAACACTGGTGCGCGTAGGAAGTCTCGCTTGGCTAGGAGGAAAAAGG
CAGTTGAGATCCACCACGGTTGGTACGTGCCAGACACAGCAGCAGCAGCAGCAACAGAAGCTGTGACCATGGCTGCGTGACAGAGA
TAATGGAAAATTCGTTTTTCTTATAAGAGATCATATTGAAAAAGATGTGAAAATTGCTTTCAAAATCAAATATGTTTATTTCATGT
ATAATTCATTTCGACTTCAGTTTCTTCTTCTGTACTGTTGAGCCTCAGCTTGTTGTCTTCTTCTTCTTTTGGCTTGGCCTTGACCT
GGTTTAGTAAGATCTCAGTTCTTGGCTCTGGCACCATTCCCCTCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ33842 unnamed protein product [Thellungiella halophila] | 863 | 2e-090 |
| NP_188137 30S ribosomal protein S20 [Arabidopsis thaliana] | 828 | 2e-086 |
| XP_002882919 hypothetical protein ARALYDRAFT_897793 [Arabidopsis lyrata subsp. lyrata] | 789 | 7e-082 |
| XP_002285149 PREDICTED: hypothetical protein [Vitis vinifera] | 520 | 1e-050 |
| XP_002532240 30S ribosomal protein S20, putative [Ricinus communis] | 502 | 1e-048 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ASV6 30S ribosomal protein S20, chloroplastic | 846 | 7e-090 |
| B7JWV1 30S ribosomal protein S20 | 196 | 2e-014 |
| B1WZT9 30S ribosomal protein S20 | 184 | 4e-013 |
| B7KG02 30S ribosomal protein S20 | 181 | 1e-012 |
| Q8YWL3 30S ribosomal protein S20 | 175 | 5e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9T1X1 30S ribosomal protein S20, putative | 502 | 9e-049 |
| B9N1D8 Predicted protein | 488 | 4e-047 |
| C6SV60 Putative uncharacterized protein | 469 | 6e-045 |
| C6TFB9 Putative uncharacterized protein | 467 | 1e-044 |
| A9NV81 Putative uncharacterized protein | 438 | 2e-041 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G15190.1 chloroplast 30S ribosomal protein S20, putative | 847 | 5e-091 |
| AT3G15200.1 pentatricopeptide (PPR) repeat-containing protein | 115 | 4e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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