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Information for unigene UN22532
| FASTA Sequence |
| Unigene ID: UN22532 | Length: 817 |
| SNP | AATCAAAGCCGAAAAGATATACTGTATAGATCCATCACTGTTATCAAAATGTTATATTTTCCGCTAGTTCTTATTTGATGATGAGT
TATTTTTGCAGACCTTCAAATTTTCTCTATTATACATACTTTTTTCCAATTCAGCAAAACGACACAGATTCCTTTATAACAAAAGG
AACTTCACACAAGATCACAAAGGACTTCCAATCACAAATCTAAATACGCGATTACTCTGTTTATTTTATTACACAGACTTTAAAAG
TCCCAAGACTTGATTTAATCATCATCGCCGGTAATCTCCACCACTCTCACATTGCGATTCTCCTCGATCCCCGGCGTTGACTGCGA
AGAAGCAGCACCATCTTTCGCGACGAACACGACGAGGAAACAATCCTCCATCCACGCCGTCACCTGATCCGTCAAAGCGTTGTCGG
GGAGCTTGAACCTGCTCATGAACTTGTTGTCTCCCGTGCAGATCTGGAGGTATCCTTCGTCGTCCACGAACACGATCGCTTCGTCC
TGAGTCGTTCCCGGAAGATACGCTTTGAAAACGTGAGCCGTCGGAGTCTCCGTCCAGTTGAGCTGGGTCTCGACGGTGGATGGAGA
AGAGAAAGGGGAGAGGTCTCGGGAAAGTGAAGGAAAGTGGCGAGATAGCAGGAGGGATGGCGAGGGGAAGTCGAGGAAGGTGTTCA
TGAGTTCAAATGGCTCCCAGATTCTATCGCCGGGAGAGATTCTCCGGCGATCATCGTTGATTGGAATGATCGACATTTTCTTCTAC
TCAAGTGAGGAGAGAAGCTGAGAGTTAAAAGCTACTATAATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883997 hypothetical protein ARALYDRAFT_480538 [Arabidopsis lyrata subsp. lyrata] | 717 | 1e-073 |
| NP_179521 HSP20-like chaperone [Arabidopsis thaliana] | 686 | 5e-070 |
| XP_002308104 predicted protein [Populus trichocarpa] | 241 | 2e-018 |
| XP_002324683 predicted protein [Populus trichocarpa] | 241 | 2e-018 |
| AAD15628 low molecular weight heat-shock protein [Corylus avellana] | 226 | 1e-016 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O64564 18.5 kDa class IV heat shock protein | 686 | 2e-071 |
| P19037 18.1 kDa class I heat shock protein | 176 | 3e-012 |
| Q05832 18.3 kDa class I heat shock protein | 168 | 3e-011 |
| P05478 18.5 kDa class I heat shock protein | 164 | 8e-011 |
| P19243 18.1 kDa class I heat shock protein | 122 | 6e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HAX6 Predicted protein | 241 | 1e-018 |
| B9IN54 Predicted protein | 241 | 1e-018 |
| Q9ZPQ0 Low molecular weight heat-shock protein | 226 | 7e-017 |
| B9RE65 Heat-shock protein, putative | 197 | 2e-013 |
| D6BR57 Heat-shock protein | 143 | 3e-007 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G19310.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, response to high light intensity, response to hydrogen peroxide, response to heat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP18.2 (heat shock protein 18.2) (TAIR:AT5G59720.1); Has 527 Blast hits to 527 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 34; Plants - 479; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | 687 | 2e-072 |
| AT5G59720.1 HSP18.2 (heat shock protein 18.2) | 176 | 3e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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