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Information for unigene UN22568

FASTA Sequence
Unigene ID: UN22568Length: 1199  SNP
GCAGCAAATAAAATGACAGATTCATATATAAAAAGCACAACTGCAAAACATTCCATGTGAAAAATATTGATACTGTTAACACATGT
TTAATAGTACACAAACTTTTTCAATTCGACCAAGTGCCCGAGCAGAGTTGCTTATATCTGGAACCAGATGCGGTGGTGTACTGTGT
TCCTACGAGCTATCAAAACCAAATATCCGGAAAACACCTTCATCGCCATAATATTTGGCACTCTTGTCATCACCTGCATATGCAAG
TAAGTTGTATTTGGGATTCCACTCCACGCTATTCATGGCAGCTCTACATGGAATTTGATGCACCGTCCGCCCAGTTTGGACGTTTG
CAATATCTATAAATAGATCCTCACTGGCTGAAGCAATGTATTCTCCTGAATGATTGAAGCTTATTGTCCTGACTGGCGAGTCAAGT
TTTGTAAATGTTCTCAAACAAAGCATGTCTGACATATCCCAAAGGCTGACTAAGGAATCCGCACTCCCAACTGCAAAGTATCTTCC
TTTAGGATCAATTGCAATGCAATAGCACCCGGCTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGATCATTTTGCATTTTCTCAA
GTGGATATGAGAGAACTTCAACAGTGCCAAGTCCAGTGGTCAAGAAGAAAAGATCTCCTGACATATTCCAAGCAATCTCATTTACC
TCATATGAGAATTTGCGCTTGTATAGGGATTTATTAAACTTACGGACATCCAGAATGGTAAGCTCATCGTCCCTATTACCAACAGC
TATATGTGTCCCGTCAGGTCTGTAGGTGATGTTTATATTCTCCCCACTAAGTTCTGCCTGCTGTGTGCATTTTCCACTGCGAGCAT
CCCAGAGACGAACGCTCTTATCACCAGAGGCAGTAGCAACAAGATCTGAATGTTTAGGGTCCCAGCATAGCTGATCCACACTATCA
GTATGTCCCTTTAGCTCAAGGTCCTTAACCTTACTATGACCGTGAGGTTCAATGGTCCAAACACGAGCTGTTTGGTCAACAGAACC
AGAAGCAAGCTTTGTCCCATTAGAGTTCCAAGCCACCGAATGTACCTTCTTCTTGTGACCTTGATACTCTCTGCTATGAAGATTCT
TGAAAGGAATCGTCTCCTCCATCTCCTTGTTCCACTCAACCTTCTTCAACCTTCCTTCCCGACTCACTCAATGTATCCCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866128 transducin family protein [Arabidopsis lyrata subsp. lyrata]15336e-168
NP_200424 THO complex subunit 3 [Arabidopsis thaliana]15273e-167
XP_002274754 PREDICTED: hypothetical protein [Vitis vinifera]14637e-160
XP_002300586 predicted protein [Populus trichocarpa]14332e-156
ADE77625 unknown [Picea sitchensis]13751e-149

Swiss-Prot top hits (Blast detail)Scoree value
Q29RH4 THO complex subunit 38182e-086
Q8VE80 THO complex subunit 38182e-086
Q96J01 THO complex subunit 38173e-086
Q9USL1 Uncharacterized WD repeat-containing protein C18B5.10c5825e-059
P14197 WD repeat-containing protein AAC35233e-052

TrEMBL top hits (Blast detail)Scoree value
Q9FKT5 Gb|AAF54217.115272e-167
A5ADM7 Putative uncharacterized protein14635e-160
A9P9W4 Predicted protein14332e-156
D5ADK6 Putative uncharacterized protein13758e-150
A9TTX0 Predicted protein13282e-144

Arabidopsis top hits (Blast detail)Scoree value
AT5G56130.1 transducin family protein / WD-40 repeat family protein15288e-170
AT5G67320.1 HOS15 (high expression of osmotically responsive genes 15)2402e-020
AT5G08560.1 transducin family protein / WD-40 repeat family protein1792e-013
AT5G08560.2 transducin family protein / WD-40 repeat family protein1792e-013
AT2G47410.1 nucleotide binding1381e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  20%
 
65  50%
 
113  30%

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