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Information for unigene UN22581
| FASTA Sequence |
| Unigene ID: UN22581 | Length: 876 |
SSR | | GGGGAATCGAATGGAAGACTCTAACTGATACAGAAGGTTTTAGAGATTAGTTAGAATTTTATGAGATCGGAGTTCTTGGAGAGGGT
TTGAGGGGGAGAGAGAGAGATTTGAGAAAATGATAAAGGCAGTGATGATGATAAACACACAGGGCAAGCCACGCCTATCCAAGTTC
TACGATTTCATGACTGTAGAGAAGCAACAAGAGCTTATCCGCGGCGTATTCTCAGAATTGTGCAGTAGACCTGAGAATGTAAGCAA
TTTTCTGGAGATTGATTCATTGTTTGGCCCGGATTCTCGGCTTGTATACAAACACTATGCTACTCTCTATTTCGTGCTTGTTTTTG
ATGCATCAGAGAATGAGCTTGCTATGCTTGATCTCATTCAAGTTCTTGTTGAAACACTGGACAAATGCTTCAGCAATGTCTGTGAA
CTCGACATTGTGTTCAACTACAGCAAGATGCACACAGTGTTAGATGAGATTGTGTTTGGAGGACAGGTTCTTGAAACTAGTTCCAC
GGAAGTCATGAAGGCTGTTGAAGATATTTCAAAGTTGGAAGCTGCTTCAAACGCTATTTCACTTGTCCCCAAGTCTGTTTCCGGGT
GGAGAGGCCGATAGCTTCAAAACTTGCCGTAACCGTGACAAAGAACAAGTCATATTCCAAAACATGTTTTTTCATGCCTTGAAATT
ACTCTCATCACATTCCTTTGTAATTCAGTTTCTCTTTGAAGTGTGTTGCGTTGCTTACACGAAATTGTGTTTCTAGCCCTTTGAGC
GTGTAATGCTTGCTTAATGGACTCAAATATGGGCCTGATAATCGCAATTAGGGGAATTATACTGCATGCTGGTTTGATATGTTATA
ATAAAACTGTAGAACG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_190655 AP-3 complex subunit sigma [Arabidopsis thaliana] | 786 | 1e-081 |
| XP_002876049 clathrin adaptor complex small chain family protein [Arabidopsis lyrata subsp. lyrata] | 781 | 5e-081 |
| XP_002310231 predicted protein [Populus trichocarpa] | 729 | 6e-075 |
| XP_002266832 PREDICTED: hypothetical protein [Vitis vinifera] | 712 | 5e-073 |
| XP_002521592 AP-3 complex subunit sigma-1, putative [Ricinus communis] | 707 | 2e-072 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q2YDH6 AP-3 complex subunit sigma-1 | 427 | 3e-041 |
| Q92572 AP-3 complex subunit sigma-1 | 427 | 3e-041 |
| Q9DCR2 AP-3 complex subunit sigma-1 | 427 | 3e-041 |
| Q1JQA3 AP-3 complex subunit sigma-2 | 421 | 1e-040 |
| P59780 AP-3 complex subunit sigma-2 | 421 | 1e-040 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8VZ37 Putative clathrin coat assembly protein | 786 | 1e-081 |
| B9HEX1 Predicted protein | 729 | 4e-075 |
| B9S6H3 AP-3 complex subunit sigma-1, putative | 707 | 1e-072 |
| B9MXP0 Predicted protein | 704 | 3e-072 |
| C6SZQ0 Putative uncharacterized protein | 701 | 7e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G50860.1 clathrin adaptor complex small chain family protein | 787 | 4e-084 |
| AT2G19790.1 clathrin adaptor complex small chain family protein | 278 | 5e-025 |
| AT2G17380.1 AP19; protein binding / protein transporter | 255 | 2e-022 |
| AT1G47830.1 clathrin coat assembly protein, putative | 253 | 4e-022 |
| AT4G35410.2 clathrin adaptor complex small chain family protein | 248 | 1e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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