RadishBase

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Information for unigene UN22592

FASTA Sequence

Unigene ID: UN22592	Length: 1401	SSR
GGAATGATCCAACAACTTCAAGAACAAAAGAGACTGTTGGTGTTGTTCAATCTACGAGTAGTCAGGAGAATAATAATAATAATAAT CAGTTTCTTGATCCAAGAAAGTCACACAACATTGCTATTTTGCTTAGAGCTCTTAATGTAACCGCCGATGAAGTCTGCGAAGCCCT TGTTGAAGGAAACTCGGATGCGCTTGGTTCCGAGCTTCTCCAATGCCTGCTTAAGATGGCACCTACCAAAGAAGAAGAGGCCAAGC TCAAGGAGCTTAAAGAGGATGATGATGATGAATCATCTCCTTCCAAGATTGGACCTGCAGAGAAGTTCCTCAGAGCTTTGCTCAAC ATTCCTTTGGCTTTCAAGAGAATCAACGCAATGCTTTACGTAGTCAACTTCGAGTCCGAAACCGAGTACCTCAAAAGATCATTCCA CACCCTCGAGGCTGCTTGTGGGGAGTTAAAGAACACTAGGATGTTCTTGAAGCTTCTAGAAGCGGTTCTCAAGACGGGGAACCGGA TGAATGTTGGGACTAACAGAGGAGACGCACACGCTTTCAAGCTCGACACGCTCTTGAAGCTGGTGGATATCAAAGGAACAGATGGG AAGACCACCTTGCTGCACTTTGTGGTTCAAGAGATCATAAAATCAGAAGGAGGTCGCGTTTCTTCTTCCACTGCTCCAACTCAAAG CCCTATAGGCGTTGTTAACATAGCCGAGCAATCAGCGTTCCAAGACGACTTAGAGCTGAAGAAACTTGGGTTGCAAGTCGTCTCAG GTCTCAGCTCTCAGTTAACAAACGTCAAGAAAGCAGCTGCGGTGGATTCGAACTCCCTGGGGAACGAAGCAGGTGAGCTCGCTAGA GGGATAACAAAGGTCAAGGAAGTAATCGATGAGCTAAAGCAAGAAGCAGGAGCAGAGAGGTTCTTGGACTCGATGAGCTCGTTCTT GAGCAAAGCTGAGAAAGAGATCACGGAGATACAATCGCAGGGAGACAATGTCATGAAGATGGTTAAAGAAGTAACGGAGTACTTCC ATGGGAACTCGGAGTCTCATCCTTGTCGGATATTCACCGTTGTCAGAGACTTTCTGATGGTTCTTGATCAAGTGTGTAAAGAAGTT GGTCGTGTAAACGAGAGAACAGTGTATGGTTCTTCAGTACCACGAGGTTCAGCTTCGAACCAGGCTGTCACCACGCCGCTTTTCCC CGTGGCTAACGATAACAACTCAGAGCAGAGTCACTCGGGATCTCTAGACAACGAAGGAGACGAGGACTTGTTCTAAGTGAAAACGA TTTGATTCAGTGTATTTGTCTAGTGTGTTTTGGTTTCATGTGGTCCGTACTGAAGAAACATATGTTTTATGTGTATTTAAAATTTT GTAATGAAAGTTATTAGATTTTTGG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_181908 formin-like protein 2 [Arabidopsis thaliana]	1579	3e-173
XP_002880068 hypothetical protein ARALYDRAFT_483497 [Arabidopsis lyrata subsp. lyrata]	1579	3e-173
XP_002275001 PREDICTED: hypothetical protein [Vitis vinifera]	1239	9e-134
XP_002534405 conserved hypothetical protein [Ricinus communis]	1227	2e-132
XP_002310397 predicted protein [Populus trichocarpa]	1179	8e-127

Swiss-Prot top hits (Blast detail)	Score	e value
O22824 Formin-like protein 2	1579	1e-174
Q8S0F0 Formin-like protein 1	1134	5e-123
Q9SE97 Formin-like protein 1	1016	3e-109
Q8H8K7 Formin-like protein 4	925	9e-099
Q9FJX6 Formin-like protein 6	925	9e-099

TrEMBL top hits (Blast detail)	Score	e value
B9T836 Putative uncharacterized protein	1227	1e-132
B9HGJ6 Predicted protein	1179	5e-127
B9IB02 Predicted protein	1138	3e-122
A2WXY2 Putative uncharacterized protein	1134	9e-122
B9EVC8 Putative uncharacterized protein	1134	9e-122

Arabidopsis top hits (Blast detail)	Score	e value
AT2G43800.1 formin homology 2 domain-containing protein / FH2 domain-containing protein	1581	7e-176
AT3G25500.1 AFH1 (FORMIN HOMOLOGY 1); actin binding / actin filament binding / protein binding	1016	2e-110
AT5G67470.1 formin homology 2 domain-containing protein / FH2 domain-containing protein	932	1e-100
AT5G54650.1 Fh5 (FORMIN HOMOLOGY5); actin binding	777	1e-082
AT5G54650.2 Fh5 (FORMIN HOMOLOGY5); actin binding	777	1e-082

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			40%


6	2			40%


11	1			20%

Unigene Members	Member information