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Information for unigene UN22606

FASTA Sequence
Unigene ID: UN22606Length: 1679  SNP
GGAAAGTCTAAAATAAATAAATAAAACAATAGTCAAATAAAATGGAGTTCTCTCTAAAACCTTCAACTTTAAAGATGACTCGGACA
AGTTTTGTCATAGTAGTAGTTTTAGCAATAAGCAGTTTTCAGATGATGGAATCATCTCCAGATTTAGCCAACAAGGTGAAGGCAAA
TATTCAATATAACGCGATTAATTGTCGAAAACATAGCGCAGTTATAACCGAATTTGGAGCCGTGGGTGATGGAAAAACATCAAACA
CAAAAGCGTTTAAGGAAGCCATTACCAAGCTTGCTCCTAAGGCGGCCGACGGTGGAGTGCAGCTCATTGTTCCACCGGGAAAATGG
CTTACCGGAAGTTTCAACCTGACCAGCCATTTTACTTTGTTCATCCAGAAAGATGCAACTATTCTTGCTTCTCAGGATGAATCTGA
ATATCCAGTGGTTGCACCATTGCCATCATATGGACAAGGAAGAGATGCAGCTGGGCCAACATTTGCTAGTTTAATCTCTGGCACAA
ACCTAACTGATGTTGTTATCACCGGTAACAACGGAACAATCAACGGACAAGGAAAATACTGGTGGGTGAAGTATAGAAGTGGTGGA
TTTAAGAATATCACGAGACCTTACACACTAGAAATCATGTTCTCTAAAGACGTTCAGATCTCGAACATCACGATCATCGATTCGCC
TGCATGGAATATTCATCCAGTGTATTGCACTAACGTCATCGTTAAAGTGTTACCATTCTGGCTCCTATCGATTCTCCTAACACCGA
TGGAATCAACCCTGATTCTTGCACCAACACGTTGATCGAAGACTGTTTCGTAGTCTCCGGAGACGATTGCATCGCCGTCAAGAGCG
GTTGGGATCAGTTCGGTATCAAAGTCGGAATGCCAACTCAGCAACTCTCGATCCGAAGGCTCACATGCATATCTCCCGATAGTGCT
GGAATAGCACTCGGAAGTGAAATGTCCGGTGGAATCAAAGACGTTAGGATGGAAGACATAACGTTGCTTCAGACACAATCCGCTAT
CCGAATCAAAACAGCTGTTGGTCGTGGAGGTTACGTTAAAGATATCTTTGCTCGAAGGTTCACAATGAAGACAATGAAATACGTTT
TCTGGATGAGTGGTGCCTATAACCAACACCCTGCTTCGGGTTATGACCCCAAGGCTATGCCCGAGATTACGAATATTAATTACCGT
GACATGACCGCGGATAACGTTACGCAGCCCGCTAGGCTCGATGGGTTCACCAACGATCCTTTCACAAAGATATGTATGTCGAATAT
TAACATTGCTTTGGCTGCTGAGCCCAAGAAGTTGCTGTGGAATTGTACGGCCATTTCCGGAATTTCGAGCAAGGTGACGCCAAAAC
CGTGTAGCTTGTTACCGGAGAAATCTCCCATTGACTGTGCTTTTCCTGTTGATAAGATTCCTATTGAATCTGTTGTCCTGAACAAA
TGCTCTGCTTAGAGAATGTTGCGGATATCATATTTTTTTAATTTCATCATCATATAATATATATACCTTAGCGAATATGGCCCAGC
TGCTACTGTATTGTATAAAGCTGATAGGTTCATGCAATGGTTTTACTATACTAAACGAAGTTATATAATTAGCTTTGTGGAATTAT
TAAGTTCCTTAATTAATTAATACATGATTATAAACATTTGAGACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_179968 Pectin lyase-like protein [Arabidopsis thaliana]12344e-133
AAC63679 putative polygalacturonase [Arabidopsis thaliana]12344e-133
ABK28510 unknown [Arabidopsis thaliana]12344e-133
XP_002878707 glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata]12344e-133
NP_190464 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]10373e-110

Swiss-Prot top hits (Blast detail)Scoree value
A7PZL3 Probable polygalacturonase8731e-092
P27644 Polygalacturonase2233e-017
Q9LW07 Probable polygalacturonase At3g157201302e-006

TrEMBL top hits (Blast detail)Scoree value
A0MEP7 Putative uncharacterized protein (Fragment)12343e-133
O82218 Putative polygalacturonase12343e-133
Q1PF10 Glycoside hydrolase family 28 protein/polygalacturonase family protein12343e-133
Q9SMT3 Endo-polygalacturonase-like protein10372e-110
B9RIT4 Polygalacturonase, putative9502e-100

Arabidopsis top hits (Blast detail)Scoree value
AT2G23900.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein12351e-135
AT3G48950.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein10371e-112
AT4G23500.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein9195e-099
AT3G61490.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein7923e-084
AT3G61490.2 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein7923e-084

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
96  46%
 
101  8%
 
72  15%
 
82  15%
 
121  8%
 
61  8%

Unigene MembersMember information