RadishBase

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Information for unigene UN22623

FASTA Sequence

Unigene ID: UN22623	Length: 1314		SNP
GCATAACACACAATAAAAGAGTTTTATTATTGACATGAAAACCTTATAGTAAAACATTACAAAGTTCATTCAACAAAACATTACAT ATATTTACGAATCTTTTTTCTTAGTTTGACATGGATTCTTATTATAATTGAGTGGTTGATAATAGCCAAAAATAATAACACAAAAG GGTTGGTAATAACACAAAGATAGAGCTGAATGTTCCTTTAGTTAACTAAGGGAAGTACGTGGTAGTAGAAATAGCCTCCAATTGGA CTTCAACGATCAACGCGTCATTCACAAGGAAACCCTTTGACGAATCTCTGAGATCATCGAAAGAGATAAGGTTCACGATACCCCAA GAGTAGGTTCTTCCGTACCAATTCCTTAGTTCCGATTCGCGGTTACTGAGTTTGCGTTGGTTAAGAACTCGAAACTTGACTCGAAC ATAAATGTACTCATATGCTCTTCTTTGATTTGTAGAAAGTTGAAGAAACAATGAAACGTATTTTCCGCTTCCGGAGCCAGAACCAG TTGGAACCATTCTTAAGTTCCATTTTTTTCCTCCAAGAGAGAACACAGATGAGTAAGCATCTTTGACCAACGTGGAGAAGTCTCAA TTCTCCAGGTGAATTTATCAGAACTACTGCTGATTGAGAAAGTTTCTGATTCTTCAAAGGGAGTAGGAACGGTCACATCAACACCA AACTCACAGTGTTCTCCATTGTAAAGGTAACCATTTTTCGGGTCTTTGAAGGTATCAACGGGGAGGACCTGAGAGAATCCCCACAT CGTGTTGAAGGCATCGAATCGCCACACATCCGTATCTTGGATGGTAAAATATTTCCTCTCGTTCCTGTTGAAGATGTAAAACCTGA GATCCGCGTAAACCTCTTGATGTGCAGAATCGACGAAACCTGACTTGTCTATTTCTACGTAAAGAGAAACATAACCTGCACCACCA TCCTTTGTGTTCCCATTAAGGTACACACGGAGAATCCAATTGTATCCACCAACCGTGAAAGGACGAGTTTCAAATTGGTCTATAAC GTTCGTCTCAATCTTGTAAGAGTAGGTTGATGGACGACGATTTCTCATACCTGTTACCGTCTTCGAATGAGAGACATTATAGTGAC GCGATGAGATCTCTTGATGTTTTTGTACATAAGGCACTTCTTCTTTTAGATTTGTATTGAAGTCATCGGTGATTTGTCTTATCAAG GATTGTGAAGACGCATATGTGATAAAGAGACAAAGAAAGAGATATGTAAGAGAGATAGAGATGGTGTTTCTGTAGTGATTTTTCAT GTTTTTCTGTGGATGGAGTGTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002893426 predicted protein [Arabidopsis lyrata subsp. lyrata]	634	1e-063
XP_002883241 hypothetical protein ARALYDRAFT_479561 [Arabidopsis lyrata subsp. lyrata]	632	2e-063
NP_566660 TRAF-like family protein [Arabidopsis thaliana]	617	1e-061
XP_002879153 hypothetical protein ARALYDRAFT_901780 [Arabidopsis lyrata subsp. lyrata]	574	1e-056
NP_188671 TRAF-like family protein [Arabidopsis thaliana]	526	4e-051

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FPT1 Ubiquitin carboxyl-terminal hydrolase 12	141	7e-008
Q84WU2 Ubiquitin carboxyl-terminal hydrolase 13	133	6e-007

TrEMBL top hits (Blast detail)	Score	e value
Q9LTQ5 AT3g20370/MQC12_13	617	7e-062
Q8W0Z1 AT3g20360/MQC12_11	526	3e-051
Q9LTQ7 Genomic DNA, chromosome 3, P1 clone: MQC12	518	2e-050
Q9LTQ4 Dbj\|BAA87936.1	456	3e-043
Q9LRJ7 Gb\|AAD17415.1	411	6e-038

Arabidopsis top hits (Blast detail)	Score	e value
AT3G20370.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	617	4e-064
AT3G20360.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	526	1e-053
AT3G20380.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	457	1e-045
AT2G15710.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	403	3e-039
AT3G22080.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	399	7e-039

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	9			32%


8	4			14%


6	3			11%


12	2			7%


7	10			36%

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