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Information for unigene UN22722
| FASTA Sequence |
| Unigene ID: UN22722 | Length: 907 |
SSR | SNP | ATCCAACTCGGCTAAAAGTGCGTGCCCTAAGAGAGTAACGTCGCGACGGAGAGAGAGAGAGAGGCGATGGAGGAAGAGGAGCACGA
GGTATACGGCGGAGAGATTCCGGACGTCGGAGAGATGGATGGAGACATGGACATGACTGCTGCTGATGATGATGCCGCTAAGGAGT
TGGATGAGATGAAGAAGCGATTGAAAGAGATTGAGGACGAAGCTGCTGCTCTTCGTGAGATGCAGGCCAAGGTTGAGAAGGATATG
GGACCTCAAGATGCTGGTACTGTAGCAGCAGATCAAGCAGGCAAAGAGGAGGTGGATGCTCGATCTGTTTTTGTTGGCAATGTTGA
TTACGCTTGTACACCTGAAGAAGTGCAGCAACATTTCCAATCATGCGGCACAGTCCACCGAGTGACAATTCTGACAGACAAGTTCG
GGCAGCCAAAGGGGTTCGCTTATGTCGAGTTTGTGGAAGCTGAAGCTATACAAGAGGCGCTACAACTGAACGAATCAGAGTTACAT
GGTCGTCAGATAAAGGTGATGCCTAAGAGAACAAACGTTCCTGGATTGAAACAGTTCCGTGGTAGAAGATTCAACCCGTACATGGG
CTTCCGCAGACCTTTCATGTCTCCGTATATGTATTCTCCATATGGATATGGGAAAGTTCCTAGGTTCAGAAGGCCAATGCGTTACA
TGCCATACCAATAAAACCATCACGGTTGCTTTTATTATATCCATCCATTGTTTGAGCTTTCAGTGACTTCTCCTTCTCTTTGTTTA
AGAACTTTGCTATAAAACTTTTCGAATCTTGAATTGTTTCACAAGTTTCATATCGTCCTTTTGATCAGTGATGATACACTTTTTTT
TGTGTTACATTATGCGGATGGGTTTAATATCAGTTGAAATTATGTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABL97957 poly(A)-binding protein II-like [Brassica rapa] | 1017 | 2e-108 |
| NP_201329 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1014 | 5e-108 |
| XP_002866661 polyadenylate-binding protein family protein [Arabidopsis lyrata subsp. lyrata] | 1009 | 2e-107 |
| XP_002531675 poly-A binding protein, putative [Ricinus communis] | 917 | 1e-096 |
| XP_002306300 predicted protein [Populus trichocarpa] | 908 | 1e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9DDY9 Polyadenylate-binding protein 2-A | 389 | 7e-037 |
| Q7ZXB8 Polyadenylate-binding protein 2-B | 388 | 1e-036 |
| Q6NVP7 Polyadenylate-binding protein 2 | 382 | 5e-036 |
| O14327 Polyadenylate-binding protein 2 | 375 | 3e-035 |
| Q28165 Polyadenylate-binding protein 2 | 373 | 5e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A1YMZ8 Poly(A)-binding protein II-like | 1017 | 2e-108 |
| Q9FJN9 Poly(A)-binding protein II-like | 1014 | 4e-108 |
| B9T0A6 Poly-A binding protein, putative | 917 | 7e-097 |
| B9H4R7 Predicted protein | 908 | 7e-096 |
| B7FID7 Putative uncharacterized protein | 903 | 3e-095 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G65260.1 polyadenylate-binding protein family protein / PABP family protein | 1015 | 2e-110 |
| AT5G10350.1 polyadenylate-binding protein family protein / PABP family protein | 885 | 2e-095 |
| AT5G10350.2 polyadenylate-binding protein family protein / PABP family protein | 803 | 7e-086 |
| AT5G51120.1 PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding | 711 | 3e-075 |
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 127 | 2e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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