RadishBase

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Information for unigene UN22763

FASTA Sequence

Unigene ID: UN22763	Length: 1150	SSR	SNP
TTCCTCTCTCTCTCTCTTCTTCTCTCTTTCGCAACTCTCTCTTTTCTCTCTCCTTGTCCGAACGAATCAGAAACAATTGATGTTGA CCTCGACCTTCCTCCACTAGCAACTGATCTAATACCGTTTCTCTCTCTGTAAAGAGAGCTATGGCGGCCGTTTCCTCAAACCCTCG CACCGTAGAAGAGATCTTCAAGGATTACAACTCTCGTCGCTCCGCTCTTCTTCGTGCTCTTACTAAAGATGTTGATGATTTCTACT CTCAATGCGATCCGGAAAAGGAGAATCTTTGTTTGTACGGACACCCGAACGAGTCGTGGGAAGTGAATCTGCCGGCGGAGGAAGTT CCACCGGAGCTGCCTGAGCCTGCGCTCGGTATCAATTTCGCTAGGGACGGTATGCAGAGGAAAGACTGGCTCTCTCTCGTTGCTGT TCATAGTGATTGTTGGTTGCTCTCTGTTTCTTTCTACTTTGGTGCTCGCCTTAATCGCAACGACAGGAAGCGGTTATTCAGTCTGA TCAACGATCTCCCAACTCTATTCGATGTAGTGACTGGTAGGAAACCCATCAAAGACAACAAGCCAAGCACCGATTCCGGAAGTAAA TCCAGAAACGGCACTAAGAGATCAATAGAAGGGCAGCCAAAGAGCACAACACCGAAACTGATGGAAGGGAGCTACGAGGATGAAGA TGAAGATGAAGAAGAAGAAGACGAGCATGGAGACACTCTCTGTGGAATCTGTGGAGGCAACTACACACAAGATGAGTTCTGGATTT GCTGTGATGTTTGCGAGCGTTGGTACCACGGAAAATGCGTGAAGATCACTCCCACCAAAGCAGAGAGCATCAAGCAGTATAAATGC CCGCCTTGCTGTGCAAAGAAAGGAAGACAGTGATGATGAAAACACCTCCCACAGACTCTGGTTCTCATGTCTTAATGATATATTAT TAGTCAACCTTTTTCTTCTCTTTTTTTTTTGTTTGTTGTTGTTTCTTTAACCTTTTAATTTTAAAGCATACAGAACTCTCTCTCTC TTTTTAGAGATCCAGAAAGGGGTTTCAAGAAGTTAAGAGAGAGAGAGTAGCAACTGTTTGAGTATTATTATTCTTATAAAAAACTG AGGTGTTCCATCAAATGTGTCATGTGATTTGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884835 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	1237	1e-133
NP_187729 alfin-like 2 protein [Arabidopsis thaliana]	1221	8e-132
XP_002873214 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	1118	7e-120
NP_196180 alfin-like 1 protein [Arabidopsis thaliana]	1112	3e-119
NP_974280 alfin-like 2 protein [Arabidopsis thaliana]	1019	2e-108

Swiss-Prot top hits (Blast detail)	Score	e value
O81488 PHD finger protein At5g26210	853	2e-090
Q9W0T1 Nucleosome-remodeling factor subunit NURF301	143	3e-008
Q12830 Nucleosome-remodeling factor subunit BPTF	139	1e-007

TrEMBL top hits (Blast detail)	Score	e value
Q9SRM4 At3g11200/F11B9.12	1221	5e-132
Q9FFF5 At5g05610	1112	2e-119
Q3EB90 Putative uncharacterized protein At3g11200.2	1019	1e-108
A0FK64 PHD4 (Fragment)	999	3e-106
A9SNB6 Predicted protein	942	1e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT3G11200.1 AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding	1243	8e-137
AT5G05610.1 AL1 (ALFIN-LIKE 1); DNA binding / methylated histone residue binding	1148	9e-126
AT5G05610.2 AL1 (ALFIN-LIKE 1); DNA binding / methylated histone residue binding	1148	9e-126
AT3G11200.2 AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding	1041	2e-113
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding	871	1e-093

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


21	1			10%


11	2			20%


12	2			20%


19	3			30%


10	2			20%

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