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Information for unigene UN22770
| FASTA Sequence |
| Unigene ID: UN22770 | Length: 2153 |
SSR | | GGACTCCCCCCCTAAAGAAAATGTCGTCTTTAGCCTATTGTCCCTCCGCCGTCGCTGTATCTCCCGCTTCCTCCGCCGCTACCGTT
AACCCCTTATTCTCCTCCCTCAGACTCTTCAATCCCTTTCCACCAAAATCCTTCAAACTCGTCGCCAGTTTCCTCAATCCCATCTC
ACTCCATCCCAATATCCGTCGCCACCGTTTCTCCTGCGCCGCCGATACCGAAGACGAACTCCCCGTCGCATCAGAAGACGAAGAAG
AAGAAGAAGAAGAAGATGTGAAACAGACGACGCAAGCCAGTGGTGAGGAAGGGAGGCTGTACGTTGGAAACTTACCATACACAATC
ACTTCTTCTGAGCTCTCCCAACTTTTCCGACAAGCTGGAACTGTCGTAGATGTTCAGATTGTGTATGACAAAGTCACTGACAGAAG
CAGAGGGTTTGGATTCGTAACGATGGGAAGCATCGAAGAAGCTAAAGAAGCTATTCAGATGTTCAACACCTCTCAAATTGGCGGTA
GAACTGTGAAAGTGAACTTCCCGGAGGTGCCAAGAGGCGGAGAGAGAGAAGTAATGAGAGCAGTCAAGATCCGTGATGGTAACCGG
AGCTATGTTGACAGTCCTCACAAGCTCTATGCTGGGAACCTTGGTTGGGATCTGACCTCACAAGGTCTGAAAGATGCATTTGCTGA
CCAACCTGGTGTGCTTGGTGCTAAAGTTGTGTATGAAAGAGACAGCGGGAGGTCTCGGGGGTTTGGTTTCGTCTCTTTTGAATCTG
CACAAGACCTTCAGTCTGCCCTGAGGGCCATGAATGGCGTGGAAGTTGAAGGCAGAGAACTGAGGCTCAATTTGGCTTCAGAGAGA
GCCACCGTGTCTCGTCCTTTTGTAACACAAGTAGAGACTGAAGAGGGCAACGGTCTTGAGAGCAGTGAGGTGCTTTCAACCATCAG
TACATGAGGCAGCAAAAGCACAATATCTTGTTTGTATTCTACTGACTAGTGAGGCTAAAGAAGAAGATAATATATGAGATAAAAGA
AAATGAGATTGACTGTCATCTTTATTCAAAAATGTTTTCTTCCATTAAATGCTTTAATGTATAATCTTTCTGTCTCATTAGAAAGG
TAAAATATTTTTGTAGTGACTTCTGCTAGTTGGTATTGTGGTGACCGGAAAGCAGAACATCTGCAGCAGAATCCAAGTCCTGGGGG
AAGAAAACTCTGCAAGTGTTGTGGTACAAGGTTGAGCTAAGTTGATTAATATCGCCAATTCCTTTATGGCCAGCCACAACCTCAAG
AACTTGCCGAACCAAGCAAGGCTCGTTACGGCCTTTGACAATGCACTCTTGATCATACTTTTCCTTTTTCTTAGAAGGCCAGGTCG
ACTTTACAAACTTCATCCCGGCGTGTGTGTTCTTGATCTCACAGTACGGAGAGTCGGTTTCGATCATCATCCTCTCTACCGGTATC
TCTTTCATTACATCAAGATTCTCAGCTGTTTTCAACGAGCAGCCATTCACACCAATGTACATATTATCGAAAGAAAGAAGCTTATC
ACGGTCCAATGCACTTCCAGTAAACGAATGAGCAACCCCTCCAGGTGAACCTGTTCTTGTTTCTTTCAACGATTTCACAGAAATCT
GCAGCAGCTGCTCGCATATGTAAAAACATAGGCAACTTTGTTGCATATGCTAGTTCGAACTGCTTCTCAAAATACTTCTTCTGGAT
ATCAGCAGGGCAGAACTGAAGCCTATCATAATCCAATCCACATTCACCAATTGCTACCACCTTCCCTTTCTGCATTCCTTCATTGG
CTAATGAAAACAGATCCTGGTAGTGCTTCTCCGGGTCACCACTCTCTTCAAATTCATTGCATCTAGTTGGATGAACCCCAACGGTA
CAGAACAGCCTTGCATCAGTTTCTGCAATTGCAAGAGCTTCTCTTGATTCTTCCAGTGACCCACCAGTTACTATGATTCTATCGAC
TCCGGCAGACCAAGCTCGGTTCAAGACGGTTGCAATGTCCGGGAGATGACAGTTCTTTCCATGGTAAACTCCCTTGAACATCCCAT
CTGTGAAGTTAACTGCTATGTCTATCATCCTCAACGACGCCATTGTTGAGAGAAGAAACAGAGAGAATGGCACAACACAACAAACC
TTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_190807 TatD related DNase [Arabidopsis thaliana] | 866 | 3e-090 |
| NP_974418 TatD related DNase [Arabidopsis thaliana] | 852 | 1e-088 |
| ACU24602 unknown [Glycine max] | 816 | 2e-084 |
| XP_002877860 hypothetical protein ARALYDRAFT_485607 [Arabidopsis lyrata subsp. lyrata] | 797 | 3e-082 |
| XP_002264091 PREDICTED: hypothetical protein [Vitis vinifera] | 751 | 6e-077 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 778 | 2e-081 |
| Q6P1N9 Putative deoxyribonuclease TATDN1 | 479 | 8e-047 |
| Q6P8M1 Putative deoxyribonuclease TATDN1 | 479 | 8e-047 |
| Q148G4 Putative deoxyribonuclease TATDN1 | 473 | 4e-046 |
| Q640V9 Putative deoxyribonuclease TATDN1 | 467 | 2e-045 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q84TD7 At3g52390 | 866 | 2e-090 |
| Q2V3P8 Putative uncharacterized protein At3g52390.2 | 852 | 8e-089 |
| C6TNW0 Putative uncharacterized protein | 816 | 1e-084 |
| B6TDE6 Deoxyribonuclease tatD | 734 | 4e-075 |
| C5X9M5 Putative uncharacterized protein Sb02g003300 | 732 | 6e-075 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G52380.1 CP33; RNA binding | 969 | 1e-104 |
| AT3G52390.1 tatD-related deoxyribonuclease family protein | 866 | 9e-093 |
| AT3G52390.2 tatD-related deoxyribonuclease family protein | 852 | 4e-091 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 406 | 2e-039 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 234 | 2e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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