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Information for unigene UN22772

FASTA Sequence
Unigene ID: UN22772Length: 1139 SSR 
GGAAAACTGGTTACAATTGAGATCGCTCGCTCATCAGAATTTTCAATCTTCCTCCGATATCGAGAGAGAAACCACACAAAAAAAAA
ATGAGACACAACTGCTGCCATCTCTCCTTCGCTTCCGTCCTGAAGATCCTCAATTTCCTCCAAGCCTTCATCGGTATCTCCATCAT
AATCTACTCTATATGGATGCTCGATCAATACAATCGTCACGTCCCCGTCGACCCTCCTCCTCCTTCTCAGCCTCCCTCGGCTTCTT
ATCCCTTCTCTAGCTCAGGAATCGCTATCAACAGTCTCTCTGACTCCCTGAACAAACCCATCGGTCTCCTTCTCCGAGATTCGGGT
TTCCACCTCCGTTCCCTAGATCTTCCTGCTCCCTGGTTTATCTACTCTTTCATGGCGATTGGGATCTTGGTCTGTATTGTCACTGT
CATCGGTTTCATTGCAGCTGAAGCTATCAATGGCTGCTGCTTGTGTTTCTATTCAATCCTCAAAACTCTTGTCATCATACTTGAAG
CAGCTCTCGTTGGATTCATTGCCATTGACCGTCACTGGGAGAAGGATCTTCCTTATGATCCAACTGGAGAACTCACTAGCCTTCGA
GCTTTCATTGAAGCAAACATCGATATTTGCAAATGGGTTGGGGTTGGCGTGGTAGCTATCCAGCTACTGTCTTTGCTACTGGCTAT
GGTTCTAAGAGCTATGGTTTCTCCTAGGCAATCAGAGCTTGATGACGAAGATGATTATGAGAATCCGATTAACAGAGCGCGGGAGA
ATCTTCTTGCTCCACAGACTAACCAGACATCTTCTGGATCAAGCAATATTGACAACTGGAGGTCCAGAATCAGAGAGAAGTACGGA
TTGAACAACGGCCAGAGCCAGAGTCCCTCAGTCTAACTCAAAAGATTTGAGTTCGTGTGTGTGTGTTTGGTATCACTACTTTCGTT
TTGTTCCTCTCTTGCTACCTTTGTAACTTTCAGAGTGTGCATAAGTATTACACAACTTTTTAGATTGGAACATTGGTTTCTCTCTC
TCTGGTGTGTTTGCACAAAAGCGTAACGGAGATTTGTGTTTAAAAATGGGAACAAAGTGCTTATTGCTTTGCTTTAGCAATATGGT
CGTCGCATAGCATTTTTGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867437 hypothetical protein ARALYDRAFT_328819 [Arabidopsis lyrata subsp. lyrata]12111e-130
NP_001190864 Tetraspanin family protein [Arabidopsis thaliana]11796e-127
NP_194606 Tetraspanin family protein [Arabidopsis thaliana]11733e-126
NP_565468 Tetraspanin family protein [Arabidopsis thaliana]9654e-102
XP_002885992 hypothetical protein ARALYDRAFT_480447 [Arabidopsis lyrata subsp. lyrata]9611e-101

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SVU4 At4g2877011732e-126
Q93XY5 Expressed protein9653e-102
Q9SK78 Putative uncharacterized protein At2g20230; F11A3.228041e-083
A9PAK5 Predicted protein7861e-081
A9PB07 Putative uncharacterized protein7861e-081

Arabidopsis top hits (Blast detail)Scoree value
AT4G28770.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).11748e-129
AT2G20230.1 LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).9793e-106
AT2G20740.2 unknown protein3281e-030
AT2G20740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 91 Blast hits to 91 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).3281e-030
AT1G32400.1 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding2851e-025

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  23%
 
82  15%
 
122  15%
 
63  23%
 
111  8%
 
191  8%
 
91  8%

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