RadishBase

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Information for unigene UN22783

FASTA Sequence

Unigene ID: UN22783	Length: 1544		SNP
AGTAAAATATTAAATTTGGTTTTTCTTTTCTTTTTTTACTGAATGTCTTGCTCGATGATACCATTATGTAGATTTGTTTTACAGCA AACAAGTGTAACAAACCTTAAATCACTTTGCAAAATTGTATGATTAAACTATCTCTTGCTCCGTAATCCAATATGCTCAAAAGATA CCGACCGTAAAACTGTAAACAATCCGGACAACCGGTAATCTTATAAGGTCTTAGTCTGTCTTCTTGTCCTGTCCATCAATGGCTCG AAGCCTCTCAACAAGAGGAGGATGCGAGTAGTGATAAGCTGAGTACAATGGATCAGTGTTCATTGCTGATAAGTTCTCTTCCTGTA GCTTCACTAGAGCAGGACGGAGATCTTTAGCATAACCAAGCTTCACAGCAAAAGCATCAGCCTGAAACTCAAATGCTCGACTAACA AGGTTGAGGCCAAAGCTTACTAGGTGTTGAAGTGGTATTACAGTGTGCTGAAATATGATCAAACCAATTAGAACTGGTTGGGTATC AAATCCAAAACTCCTGAAGAGATCAGTGGAGTTTCTGACAAGAGTGTATCCTCCAAACTGTAAGAGGGTAAGGATTTGAACTGCAA TGAACGAGTATGTAGTGTGATTTAGCTTCCAGTGTCCAAGCTCGTGTGCAATAACCGCCACAATTTCATCTTCATTCTTGCACTGC TGAATCAATGTGTCATAAAGAACAATCCTTTTGTTCTTGAAGAAACCATACATGTAAGCATTGCTATGGCTTGACCTTGTAGATCC ATCGACGACAAACAGCTTCGTCAGAGGAAACTTTAGAGAAGAAGCAAGTTTCTCAAATTTTCTCCCGGAGGTCTCCATCTGGAAGA GGAGTGAACTTGTTGAAAAGAGGTGCAATCAAAACTGGGTATATAGTCATCATTACAAGAGACAGGACAAACATGAATGCCCACAG ATAGATGGCAAGGTAAGGACCTCCTTTCTGAACTATAACAATAATTGCGGCAACAATAGGAGGGGCTAGTATGACAGAGAGAAGTA TTCCTTTGACCATGTCCCTAAAGAACATCCATATTGTTTGTTTATTGAACCCATGTCGAGACTCAATGACGAAAGTTGAGTACAAA GAAAATGGCAAATCAGTGATCTGTGACCATATCATAACACCAGCCAAGAATGAAAGAGTGTGCAGTATTTCATTCTCTGGATCGAG TCCCACCATCGGTAGAAAACCTCCAGATAACTTCCAAAACCAAGGCAGGATCCCAAAGAACAACATCGCAGAGTCCATAAGGATAG TCACAAACTCATGAACAAAGTGAAAATGGCTTTTGTCAAGACTGTAAGCTCGGGATTTCTCAAACTTCTCTTGGCTAATGACTCCA ACCAAGGTTTTTGGGAGAGTTGGAAGCTTGAGAGCCGTGTGCTGCCTCATATCCAAGTATGTCTCAAAAACGTACATCACTATCAT AAAACCCACGACCGTTTCCATGTAAGGAATCGCCATCTCTGCCCAAAACGAAGACCTGAAGAGAGAAACGAATCGAAGACTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAK39514 CaaX processing zinc-metallo endoprotease [Arabidopsis thaliana]	1075	1e-114
NP_567212 CAAX prenyl protease 1-like protein [Arabidopsis thaliana]	1075	1e-114
XP_002874990 ATSTE24 [Arabidopsis lyrata subsp. lyrata]	1075	1e-114
AAL07084 putative CAAX prenyl protease [Arabidopsis thaliana]	1067	9e-114
XP_002277525 PREDICTED: hypothetical protein [Vitis vinifera]	1031	1e-109

Swiss-Prot top hits (Blast detail)	Score	e value
Q8RX88 CAAX prenyl protease 1 homolog	1075	4e-116
Q6EPN8 CAAX prenyl protease 1 homolog	942	1e-100
Q80W54 CAAX prenyl protease 1 homolog	463	4e-045
O75844 CAAX prenyl protease 1 homolog	462	5e-045
Q10071 Probable CAAX prenyl protease 1	455	3e-044

TrEMBL top hits (Blast detail)	Score	e value
B9RDW8 Caax prenyl protease ste24, putative	1012	1e-107
B9GQC3 Predicted protein	1005	9e-107
B9I8P0 Predicted protein	1003	2e-106
C5Y0Y9 Putative uncharacterized protein Sb04g031850	945	8e-100
B9F1T6 Putative uncharacterized protein	942	2e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT4G01320.1 ATSTE24; endopeptidase/ metalloendopeptidase	1075	4e-117

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	7			41%


9	2			12%


20	1			6%


11	4			24%


6	3			18%

Unigene Members	Member information