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Information for unigene UN22788

FASTA Sequence
Unigene ID: UN22788Length: 1854 SSRSNP
TCATGGATAATACACCTGTAATTGTGAACAAACTAGATCATGTTCGGCGCTACAGCAATATCCAAAGTAACATTTAGTCCCAATTG
ACATAATTGTCATTGTGAACATTCAGGTACGAACAAAAACAGTAACAAGTGTCTATTAGGAACAGAGTAATAAAGAGGGAGTCTTA
AAAAAAGGCTAAAGAAGAAGAATGAGAGAGATGAAGAAAGTGTTGACTTGGGCTCCATCTCACTGTTCTTTTGCTTAATCACTGGA
ATTGGCCTGAAGAGGGAAGCATGGCCTCCACACAGTTTCTTTGCCAATATCCATTAATGCTATTCCTTTAACTGTCAGTTCTGCTC
TAATCTGATCACTTTTCTCAAACTCTTTGTTCTTCCTCGCCATTATCCTTTCTTCTATCTTTTGTGAAATGTCTTCTTCGCTCAAT
CCTGCCCTTGTTAGTGTTTTCTGTTTCATTTCTTTCAAAATCTCGGCATAGCTCAGGGTAGTGAGCAAACCAAGCACATCCAGAAC
TTCCCTTGCTGTTTTCTCAATCTCAACGAGTGACACAAGCAGTGACATCCTCTGTTTCTTCTGCATTTTCTTGAGCTTGCCAATGG
AAGCATTGATGAACTTCAATGCATCTTGGTAAGCACCCGTGAGTATATGGGCAGTATTCAAATCGTCTAACATCTTTCCTTCAAAC
TCACTTTTGAGCTTGTTGATGATCTCTTTGGCTTCTGCTGTCTGTTCAGATTTTCCAGAGTCTTCAGACATTGCTTCTCGATATGG
CAGGAGAGCATCATTAAGATCTTGCAATGTCTGATAAACATAATACAAAGCTTCAGAGGAACTGTCTAGCTGAGACGCTGAGAAGC
TCAGAGGAGACCGGTAGTGAGCACTCATCAAGAAGTGCCTCAGAGCCAGTGGATGGTAACTTTCTGTCATTTCTCTGATAGTTTTG
AAGTTTTTCTTTGATTTTGCCATCTTCTCGTTGTTGATAGTGACATGCCCATTATGCAACCAGTAATTCACACCACCATCCTCACA
CGCAGCACATGTCTGAGCAAGCTCATTCTCATGGTGTGGGAATTTCAAATCTGCACCACCACCATGAATGTCGAACTTGGGAGACA
GATAGTGAGCACTCATGGCACTGCACTCGATGTGCCATCCCGGTCTTCCTCGACCCCACGGGCTATCCCAACTCGGCTCACCAGGT
TTTACAGCCTTCCATAATGCAAAATCAGCAGGGTTACGCTTTCTGGAATCAACCGCAACTCTCTCACCAGCCCGTGTATGTTCCAG
CAACTGACCCGACAACTTACCATAGTTTGGTGATTTGTCGACAGAGAAGAACACATCGCCGTCCACAGCATACCCACAATCTTTCT
CAATAATCTTTTGAATCATGTCTACAATGTGATCCATATGGTCGCTGACACGAGGCTGGTGGGTGGGGAGGAGGCACTGAAGAGCA
CCCATATCTACCAAATACTCCTCGCAAAAGCGGTTACTCAACTCCAACGGTTCCTCTCCATTCTCATTAGCACGTATTATTATCTT
GTCATCAACATCTGTGAAATTCCTGACGAAATTAACTTCATAAGACAGATGCTTCAAGTATCTGTAGAGAACGTCGAAGGAAACGG
CGGCGCGAGCATGGCCGATGTGGCTGAAATCGTAAGCAGTGATTCCGCAGACGTACAATCCGACTTTGCCGGGGTTGATCGGAGTG
AAAACTTCCTTCTGCTGCGTCATCGTGTTGTAGAGCTTCAGTTCCATCTTCTCCGCCTCCATGTCTCTCTCTCTCTCTCTATCTCC
ACGGCGATGGAAACAAACCAAGGTTGAGTGAGAGAAAACCCTTTTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002868751 tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata]23815e-266
NP_198699 cysteinyl-tRNA synthetase [Arabidopsis thaliana]23555e-263
XP_002315932 predicted protein [Populus trichocarpa]18806e-208
XP_002263803 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]18124e-200
CBI23962 unnamed protein product [Vitis vinifera]17874e-197

Swiss-Prot top hits (Blast detail)Scoree value
A5G949 Cysteinyl-tRNA synthetase11267e-122
Q6AJ23 Cysteinyl-tRNA synthetase10972e-118
Q39ZL8 Cysteinyl-tRNA synthetase10201e-109
A5D5M0 Cysteinyl-tRNA synthetase10111e-108
C6E7P0 Cysteinyl-tRNA synthetase10003e-107

TrEMBL top hits (Blast detail)Scoree value
B3LFA4 At5g3883023553e-263
B9HWF9 Predicted protein18804e-208
Q9FMB9 Cysteine-tRNA ligase15865e-174
B8BHC0 Putative uncharacterized protein13437e-146
Q8H905 Os10g0463100 protein13178e-143

Arabidopsis top hits (Blast detail)Scoree value
AT5G38830.1 tRNA synthetase class I (C) family protein23552e-265
AT2G31170.1 SYCO ARATH; ATP binding / aminoacyl-tRNA ligase/ cysteine-tRNA ligase/ nucleotide binding14851e-164
AT2G31170.2 SYCO ARATH; ATP binding / aminoacyl-tRNA ligase/ cysteine-tRNA ligase/ nucleotide binding11241e-122
AT3G56300.1 tRNA synthetase class I (C) family protein9142e-098

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
83  20%
 
67  47%
 
102  13%
 
92  13%
 
111  7%

Unigene MembersMember information