 |
Information for unigene UN22800
| FASTA Sequence |
| Unigene ID: UN22800 | Length: 1751 |
SSR | | GGCTCTCAAAAAAGCGACACTCCCTTTTAAGTCGGTTTTGTTTTATGAAGGTTTAGCGAGAGAGAGAGATAACAATGTCCGGCTCC
GATATTCCACAGGCTCCTCACTCGTCGAAAGACGCTACTGATGTTGGTTGGTACATTCTTGGTGGAAACCAGGAGAGCCTGGGTCC
ATATACCTTCTTGGAGCTGTGTGATCATTTCAAGAATGGTTACCTACAGGAAACTACACTAGTCTGGGCTGAAGGAAGAAGCGAAT
GGTAGCCACTTTCTGCTATCACTGAGTTGATGTCTAGGATTTCTGGAGCTGAAGTTGACCAATCAGCTGGAGGTGCATCTGGGTTG
GTGAATGGATATAATGCTACAACGAATCAAGAGAAGCAAGCTTCTACTGAGGATGAGTTTGAGAAATGGCAGAAAGAGATTCAAGA
AGCAGAGGCGGAGGCTGAAAGGTTGAAAAATGGCGCTGTTGGAGATGATCAGGACAGACCTTCTTCACCACCCGAGGGGGAAGATG
AGTTCACAGATGATGATGGAACTAGATATAAATGGGACAAAGCTCTTAGAGCATGGGCTCCTCAGAACGAGCCACAGGGTAGCGCT
GATCCTTATGGACTTGAAGAGATGACCTTTGCTGAGGAAGACGAAGTAATTCCAACTATAAACATCCTTGATACTTCTGTTGATAA
GGAGGATGCCTCTAAGGATGATGTGGCTAGTAAGAAAGAAGAAGATGGCTCTGATCAGACCGCGGAAATAAACAATAATGGAAAGA
GGAAGCTGCCAGAAGAAGAAACTGAAAAGAAGGAAGCAAACAAGCCTCCAGAAGCGTGGTTTGAGCTGAAAGTAAACCCACATATC
TATGTCACTGGGTTGCCCAAAGATGTCACGATCGAGGAAGTGGTTGAAGTTTTTTCTAAATGCGGCATTATTAAGGAGGATGACAG
TGGCAAGCCTCGCATAAAGCTTTACAGTGACAAGGCGACAGGAGAATTAAAAGGCGATGCTCTTATCACGTATATGAAGGAGCCCT
CAGTGGATCTTGCAATTCAAATCTTAGACGGTGCTCCTTTACGTCCAGCTGACAAGCTCCTCATGTCAGTTTCTCGAGCTAAGTTC
GAGCAGAAAGGGGAGAGATTTATAACAAAGCAAACCGATAACAAGAAGAAGAAAAAGATTAAAAAGGTCGAGCAAAAGTTGCTTGG
ATGGGGTGGTAGAGATGATGCTAAGATCGCAATACCTGGAACTGTTGTTCTGCGCCACATGTTCAGTCCGGCGGAGATGAGGGCTG
ATGAGACTCTGTGTGCCGAGGTAGAGGAAGACGTGAAAGAAGAGAGTATGAAGCATGGACCGTTTGATTCAGTGAAGGTGTGTGAG
CTTCATCCACAGGGTGTTGTGCTTATAAGATTCAAGGATCGCAAAGATGCACAGAAATGTATTGATGCAATGAACGGTCGATGGTA
TGCAAAGAGACAGATACATGCGAGCCTTGACGATGGATCAGTAAACCACGCTGCGGTTCGTGACTTTGATGCGGAAGCTGAACGGT
TAGATCAGTTTGCAGCTGAACTCGAAGCTGAATAGAAAGAAACAAAATCACAATAATTTCTTTTGTAGAATACGTTATGTTAGTTA
ATAAGTTTGAGATTTAACCTATGTTTTCATTTTTGTTGTTGAGAAACCTAACGTTCTTTCGTGTAGCAAAACAAATACCATGTCCT
TATTGATACATAAAAAAAAAGAGATTACATC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002871711 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | 2171 | 1e-241 |
| NP_197130 HIV Tat-specific factor 1 [Arabidopsis thaliana] | 2163 | 8e-241 |
| XP_002316170 predicted protein [Populus trichocarpa] | 1509 | 6e-165 |
| BAJ53149 JHL23J11.4 [Jatropha curcas] | 1339 | 3e-145 |
| XP_002512940 Splicing factor U2AF-associated protein, putative [Ricinus communis] | 1327 | 7e-144 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O43719 HIV Tat-specific factor 1 | 386 | 4e-036 |
| Q5RB63 HIV Tat-specific factor 1 homolog | 386 | 4e-036 |
| Q8BGC0 HIV Tat-specific factor 1 homolog | 380 | 2e-035 |
| O43120 Splicing factor U2AF-associated protein 2 | 257 | 4e-021 |
| P53830 Uncharacterized RNA-binding protein YNL286W | 169 | 6e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LF02 At5g16260 | 2163 | 6e-241 |
| B9HYG5 Predicted protein | 1509 | 4e-165 |
| B9RH81 Splicing factor U2AF-associated protein, putative | 1327 | 5e-144 |
| B4FUI9 Putative uncharacterized protein | 1326 | 6e-144 |
| C5Y429 Putative uncharacterized protein Sb05g002130 | 1299 | 9e-141 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G16260.1 RNA recognition motif (RRM)-containing protein | 2172 | 3e-244 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
