RadishBase

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Information for unigene UN22811

FASTA Sequence

Unigene ID: UN22811	Length: 1630		SNP
GTGACACAAAACTTCTTTCGTCCCTCTGTCCGCTCTTAAACAGCTGGAGATTAGATTAGATCTTCTATTCCAATCGTCTCTTTCGA TTCGCGCAAATTCGAAACAAAAAAAGGCTCAAAAACGATGAGTTCATCGAAGAAGGTGGAAGGGTCGTCGGCTCCGGCGAATAGAA GAGACCCGTACGAGGTGCTCTCCGTCGCAAGAGACGCTTCCGATCAAGAAATCAAATCCGCTTACCGAAAATTAGCCCTAAAGTAT CATCCGGACAAGAACGCAAATAATCCAGAAGCTTCTGATCTTTTCAAGGAAGTTGCTTTCTCTTACAGCATCTTGTCTGACCCTGA GAAGAGAAGGCAATACGACAATGCAGGGTTTGAGGCTCTTGATGCTGATGGAATGGAGATGGAAATTGACTTGTCTAACTTAGGAA CTGTTAACACCATGTTTGCTGCATTATTCAGCAAACTAGGTGTGCCTATCAAGACTACTGTGTCTGCCAATGTTCTTGAAGAGGCT ATGAATGGAACTGTTACCGTTAGGCCTCTTCCTATTGGTACATCTGTTAGCGGGAAGGTTGAGAAGCAATGCGCTCACTTTTTTGG AGTTACAATAAGTGAACAACAAGCTGAGTCAGGGGTTGTTGTTAGAGTAACTTCATCAGCACAAAGTAAATTCAAATTGCTTTATT TTGAGCAAGATTCAAGTGGCGGCTATGGATTGGCCTTACAGGAAGAGAGTGAGAAAACAGGCAAGGTGACGTCATCTGGCATGTAT TTCTTACATTTTCAAGTGTACAGAATGGATTCGACTGTCAATGCGTTAGCTGCAGCCAAGGACCCTGAATCTGCTTTCTTCAAGCG ATTGGAAGGTCTTCAGCCTTGTGAGGTCTCGGAACTGAGAGCTGGCACTCATATATTTGCAGTTTACGGTGATAACTTCTTTAAGA CTGCGTCTTACACAATTGAGGCACTCTGTGCCAAGACCTATGAGGACACAACAGAGAAGTTGAAGGAGATTGAAGCTCAGATCTTA AGAAAGAGAAACGACTTGCGGCAGTTTGAAACTGAGTACCGAAAAGCTTTGGCTCGCTTTCAAGAAGTTACCACCAGATACACCCA GGAGAAGCAAACTGTGGATGAACTGCTAAAGCAACGGGACTCCATTCATTCGTCCTTCTCTGTTGTGAAGACACCACCAAGTGGTA ACAACTTGAGCAATGGAAGTAGCAGCAAAGCGCAGGGAGATGAGCAGAAAGGAGATGGTGATTGTGCAGGAGAAGAAGGTGGAACA GAGAGTAGAGACAAATCGAAAAGGAAATGGTTTAACTTGAACATTAAAGGATCTGATAAGAAGCTTGGTTGACCAGATGGTGAATG TGTTACTATATGTTCTCATTGGTGTTTTTGTTCATTTCTTCGTGGGTACTACTCATATATCTTGTTACTGGTATTATCATTGTGTT GCGGTTATATGTTCATTTGAATGATCCATAAGCTCTTTTATTGCAGAAGGATTGTTGTGGTCATAGGAAAGCTTTTCAAGTTTGGG ATATGCAACATTGATTTTATTGTAAGTTTTTGAAGTTACTTATAGTTTCCTGAAAGATATATAAAATACAAACTATTGACAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002888659 hypothetical protein ARALYDRAFT_894602 [Arabidopsis lyrata subsp. lyrata]	1976	4e-219
NP_177004 chaperone protein dnaJ 15 [Arabidopsis thaliana]	1969	2e-218
BAF00895 ARG1 protein [Arabidopsis thaliana]	1962	2e-217
XP_002283449 PREDICTED: hypothetical protein [Vitis vinifera]	1739	1e-191
XP_002314850 predicted protein [Populus trichocarpa]	1689	7e-186

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZSY2 Chaperone protein dnaJ 15	1975	2e-220
Q8VXV4 Chaperone protein dnaJ 16	1236	1e-134
Q6XL73 Chaperone protein dnaJ 39	1070	2e-115
B8DQW8 Chaperone protein dnaJ	236	9e-019
Q6F6R1 Chaperone protein dnaJ	234	2e-018

TrEMBL top hits (Blast detail)	Score	e value
Q1H5A8 At1g68370	1969	2e-218
Q0WPQ4 ARG1 protein	1962	1e-217
A5BMV4 Putative uncharacterized protein	1739	8e-192
B9HWF7 Predicted protein	1689	5e-186
B9HJ49 Predicted protein	1657	2e-182

Arabidopsis top hits (Blast detail)	Score	e value
AT1G68370.1 ARG1 (ALTERED RESPONSE TO GRAVITY 1); cytoskeletal protein binding	1976	1e-221
AT1G24120.1 ARL1 (ARG1-LIKE 1); heat shock protein binding / unfolded protein binding	1236	9e-136
AT1G59980.1 ARL2 (ARG1-LIKE 2); heat shock protein binding / unfolded protein binding	1075	4e-117
AT2G20560.1 DNAJ heat shock family protein	198	2e-015
AT3G62600.1 ATERDJ3B; heat shock protein binding / unfolded protein binding	196	3e-015

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	4			29%


10	4			29%


11	3			21%


6	1			7%


9	2			14%

Unigene Members	Member information