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Information for unigene UN22814
| FASTA Sequence |
| Unigene ID: UN22814 | Length: 578 |
| SNP | GGAGGGTAAATAGTTCCTCCTCCATTCGAGAGAAGTAGAAGTAGTTCGAAAGTCTCTCCCAACCCTCACCTTCACCTTCACCTTCA
CCTTCTTCTTCGTTGTTTAATTGTCGAGAGCAGAGGAAGGAATCTGCAGGCCGAGAAAAATGTTGTTCTTCTCGTACTTCAAGGAT
TTGGTGGGACAAGAAGTGACGGTTGAGCTGAAGAACGATTTAGCAATCAGAGGGACACTTCATTCTGTGGATCAGTACCTTAATAT
CAAGCTCGAGAACACTCGTGTTGTTGATCAGGACAAGTACCCTCACATGCTGTCGGTGAGAAACTGTTTCATCAGAGGATCAGTGG
TGAGGTACGTGCAGCTACCTCCTGATGGAGTCGATGTTGATTTACTTCACGATGCAGCTAGAAGAGAGGCCAGAGGTGGATGATTT
TCGCAAAAAACCTACCGTTGTATCTCTAAACTTTTATTAATCTGTTGATCAACAAGACTCGAAACTTTTTTCTTTTTTTCATGTAA
TGGCTTGATGTTGAATGAACCTAGTTCCATTCTCTTTATCAAAGGATTATCTGTTTTTTTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_563682 small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana] | 473 | 1e-045 |
| XP_002304049 predicted protein [Populus trichocarpa] | 469 | 3e-045 |
| AAC72111 Similar to gb|U85207 snRNP core Sm protein homolog Sm-X5 from Mus musculus. EST gb|AA612141 comes from this gene [Arabidopsis thaliana] | 468 | 4e-045 |
| AAM62994 snRNP core Sm protein Sm-X5-like protein [Arabidopsis thaliana] | 466 | 7e-045 |
| ABK93861 unknown [Populus trichocarpa] | 464 | 1e-044 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9Y333 U6 snRNA-associated Sm-like protein LSm2 | 351 | 8e-033 |
| O35900 U6 snRNA-associated Sm-like protein LSm2 | 351 | 8e-033 |
| Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm2 | 324 | 1e-029 |
| P38203 U6 snRNA-associated Sm-like protein LSm2 | 296 | 2e-026 |
| O94408 U6 snRNA-associated Sm-like protein LSm2 | 287 | 2e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q1H595 At1g03330 | 473 | 8e-046 |
| A9PD52 Predicted protein | 469 | 2e-045 |
| Q9ZVT4 F15K9.7 protein | 468 | 3e-045 |
| Q8L5U6 SnRNP core Sm protein Sm-X5-like protein | 466 | 5e-045 |
| A9PBV8 Putative uncharacterized protein | 464 | 9e-045 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT1G03330.1 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative | 474 | 5e-048 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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