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Information for unigene UN22839

FASTA Sequence
Unigene ID: UN22839Length: 720  SNP
GGACCTGCTGCTTGCATCCACCGTCGTCAAGCTGCTGAACCATGGCGATGGCGGCGTCTATCCTCCAAGCTTCTCCTCTTTCGGTG
AATATCAACAAAAACGTGCGGATTCGTAGCTCAGGGTTGGTGGGAGGAGGAATCAAAAGGCCAGATAGAGTCTCCTCGTTAAGTGC
GGTGGGGATGGGATTGGGATTAGGATTGGATAGTCGAAAGCGATCTCTTTTGATATGCAACTCCGCCGCTAACGCCAAGTGCAGTG
AAAGTCAAGGTCAAACACAAACCGTTATTCGGGAGTCTCCGACAATAACACAAGCTCCTGTCCACTCTAAGGAGAAATCACCAAGC
TTGGATGATGGAGGAGACGGGTTCCCACCGCGAGATGATGGAGATGGAGGTGGAGGTGGAGGGGGTGGAGGCAACTGGTCTGGTGG
CTTCTTCTTCTTTGGTTTTCTCGCTTTCTTGGGTTTATTGAAGGACAAAGAGGGTGAGGAGGATTATCGAGGGAGCAGAAGACGAT
GATCATGTGTATACTTCATTGGATTAGTGTGTTTCTTTTTTGAGAATCATATTTGCTTATCTTAGACCTGAAACATACATTGTCTC
GTTTTGTATCTGTTTCGTTGAGCGGATCACTCCATATGATATGTACTGTATGTTTCTTGTACCAAAGAGATGGTCGATTTTTAAGC
TTTTTTTACTTATACATACGATACATCTTTGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564712 embryo defective 1303 protein [Arabidopsis thaliana]6174e-062
NP_001077727 embryo defective 1303 protein [Arabidopsis thaliana]6004e-060
XP_002891880 hypothetical protein ARALYDRAFT_474690 [Arabidopsis lyrata subsp. lyrata]5871e-058
XP_002330604 predicted protein [Populus trichocarpa]4095e-038
ACJ85874 unknown [Medicago truncatula]3835e-035

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C7J5 At1g56200/F14G9_266173e-062
A8MS46 Uncharacterized protein At1g56200.26002e-060
B9N5P9 Predicted protein4093e-038
B7FM91 Putative uncharacterized protein3834e-035
B9RE49 Putative uncharacterized protein3834e-035

Arabidopsis top hits (Blast detail)Scoree value
AT1G56200.1 emb1303 (embryo defective 1303)6271e-065
AT1G56200.2 emb1303 (embryo defective 1303)6091e-063
AT1G30475.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 127 Blast hits to 127 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 65; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).3752e-036
AT1G30475.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 121 Blast hits to 121 proteins in 30 species: Archae - 0; Bacteria - 14; Metazoa - 59; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).3752e-036
AT1G30475.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 121 Blast hits to 121 proteins in 30 species: Archae - 0; Bacteria - 14; Metazoa - 59; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).3752e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
106  26%
 
64  17%
 
84  17%
 
129  39%

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