RadishBase

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Information for unigene UN22859

FASTA Sequence

Unigene ID: UN22859	Length: 1013		SNP
GGATCATTCTCCAGTTTTCTCGCGAAAGTATCTTTCTCAACAGTCAGTCAAAATGCTTCTCAAGACGGTTTCTTCTTCTTCCTCTT CAGCTCTCTCGCTCGTGAGTTTCCACGGCGGAATCAAGGACGTTTCTCCTTTGTTATCATCCGTCTCGTCTCCAATCGATTCCTCC TCGAAGGGAAAGCTCTCAGTCTCTGTTCGCGCGTCTAAAATCTCAACCGCCGACGCGCTAAGCGGCGTCGTTTTCCAGCCGTTCGA GGAGGTGAAGAAGGAGCTCGACCTCGTCCCGACGAGCTCGGATCTCTCGCTCGCTCGTCAAAAGTACTCCGACGAGTGCGAAGCTG CTATTAACGAGCAGATCAATGTGGAATACAATCTCTCGTATGTGTATCACGCCATGTATGCTTACTTCGATAGGGATAACGTCGCG CTCAAAGGTCTTGCCAAGTTCTTCAAGGAATCGAGTGTGGAAGAAAGAGAGCATGCTGAGAAGTTGATGGAGTATCAGAACAAACG TGGTGGGAAGGTTAAGTTACAGTCCATTGTGGTGCCTCTCTCGGAGTTTGAACACGTTGATAAAGGAGATGCTCTTTATGGGATGG AGCTGGCTCTGTCACTGGAGAAACTGGTTAATGAGAAGCTCTTAAACCTCCACAGTGTTGCTTCAAAGAACGGAGATGTCCACTTG GCTGATTTTATTGAGAGCGAGTTTCTGACCGAGCAGGTGGAAGCAATCAAGAAAATTTCAGAGTATGTAGCCCAACTACGAAGAGT TGGCAAAGGACACGGGACGTGGCATTTCAATCAGATGCTTTTGGAACAGTAAAATCTACTTCGAGGGACTTATGGTCGTGTTTACT CTTGTGGTATTCAGTCTATGAAGCTCACTAGCAATGTATCAACCAGTTTGTGTGTTAGTTCTGCAGCTTTTGTGATGTAGACTTTT TATTTTGTAAGAGCCGAAGAGAGATGTCTTTGAATTCAGTTTTATGAATGAGTTCTTCCAACCTACC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002881713 ATFER4 [Arabidopsis lyrata subsp. lyrata]	1138	3e-122
NP_181559 ferritin 4 [Arabidopsis thaliana]	1134	8e-122
ABB22752 ferritin [Chorispora bungeana]	960	1e-101
NP_191168 ferritin 3 [Arabidopsis thaliana]	955	5e-101
NP_001146869 ferritin-1 [Zea mays]	944	9e-100

Swiss-Prot top hits (Blast detail)	Score	e value
Q9S756 Ferritin-4, chloroplastic	1134	3e-123
Q9LYN2 Ferritin-3, chloroplastic	955	2e-102
Q948P6 Ferritin-3, chloroplastic	901	4e-096
Q41709 Ferritin-2, chloroplastic	879	1e-093
Q948P5 Ferritin-4, chloroplastic	879	1e-093

TrEMBL top hits (Blast detail)	Score	e value
Q308L9 Ferritin	960	8e-102
Q0WWR6 Ferritin	955	3e-101
B6SGR9 Ferritin	944	6e-100
D3GC07 Ferritin	901	6e-095
C5MRG1 Ferritin	892	6e-094

Arabidopsis top hits (Blast detail)	Score	e value
AT2G40300.1 ATFER4 (ferritin 4); binding / ferric iron binding / oxidoreductase/ transition metal ion binding	1134	3e-124
AT3G56090.1 ATFER3 (ferritin 3); binding / ferric iron binding / oxidoreductase/ transition metal ion binding	955	2e-103
AT3G11050.1 ATFER2 (ferritin 2); binding / ferric iron binding / oxidoreductase/ transition metal ion binding	814	4e-087
AT5G01600.1 ATFER1; ferric iron binding / iron ion binding	787	5e-084
AT3G61010.1 glycosyl hydrolase family protein 85	189	1e-014

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	4			33%


6	5			42%


11	2			17%


10	1			8%

Unigene Members	Member information