RadishBase

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Information for unigene UN22924

FASTA Sequence

Unigene ID: UN22924	Length: 817	SSR
GGATCAACCAAAACAAACAAACAAACAAAAAAGAGTCTAAGCCTTTAAACGAGAGAGAGAAATGGCGACGTCGGGAACATACGTGA CGGAGGTTCCATTGAAAGGGACGGTGGAGAAACACTACAAGAAGTGGAGAAGCGAGAACCATGCCATCCCGGAAGCCATCGGTCAC CACATCCAAAATGTAACCATTCACGAAGGGGAATGGGACTCTCACGGGGCCATCAAGACTTGGGACTACACATGCGATGGGAAGCC GGAGGTGTTCAAGGAAAGGACAGAGATAGACGATGAGAAGAAAACGGTGACGTATAGAGGACTTGAAGGTCACGTAATGGAACAAT TCAAGGTGTATGACGTCATCTTTGAATTTAATCCGAAGTTGGAGGATGGCTGCGTCTGCAAAATCACTATGATATGGGAGAAGCGT AACGATGAGTTCCCCGAACCAAGCAACTACATGAAAGTCGTCAAGAGCATGATTGCTGACATGGACGACCACGTTCTCAAAGCTTA ATCATCATCATCATCATCATCGCCATCACAATCCACCATATCATTAATTCACCATCACAATCACCGTCACCGTGATCAATATCATC TCCATTACAAAATACTTATTAAGATGCTTTTCAGTTCAATAAATGGGGTCTTGCTGAGTTTATTTCTTTGTAAGACCATGCTTTTA TATGTACTCTTGTGGTCATCGACCGGTTTGATATGTTCTTGTTTACTTATCAATATATTCCAGTTTTATTAAGTGTGTCAAAGGTT TGTGGAGAATTTTCTAAATAGATCAAGATTTGAGAGCACGACC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002875076 hypothetical protein ARALYDRAFT_904347 [Arabidopsis lyrata subsp. lyrata]	683	1e-069
NP_565264 MLP-like protein 328 [Arabidopsis thaliana]	680	2e-069
XP_002875203 hypothetical protein ARALYDRAFT_322644 [Arabidopsis lyrata subsp. lyrata]	672	2e-068
NP_565265 MLP-like protein 329 [Arabidopsis thaliana]	654	3e-066
XP_002867694 hypothetical protein ARALYDRAFT_492500 [Arabidopsis lyrata subsp. lyrata]	649	1e-065

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZVF3 MLP-like protein 328	680	1e-070
Q9ZVF2 MLP-like protein 329	654	1e-067
Q41020 Major latex protein 22	186	2e-013
Q9C7I7 MLP-like protein 165	154	1e-009
Q9C7I3 MLP-like protein 168	153	1e-009

TrEMBL top hits (Blast detail)	Score	e value
C0SV41 Putative uncharacterized protein At2g01530 (Fragment)	654	2e-066
B2WS86 Major latex-related protein	646	1e-065
Q39132 At1g14950/F10B6_18	634	4e-064
Q9SUR0 AT4G23670 protein	631	8e-064
O23267 AT4g14060/dl3070w	627	2e-063

Arabidopsis top hits (Blast detail)	Score	e value
AT2G01520.1 MLP328 (MLP-LIKE PROTEIN 328); copper ion binding	681	8e-072
AT2G01530.1 MLP329 (MLP-LIKE PROTEIN 329); copper ion binding	655	8e-069
AT1G14950.1 major latex protein-related / MLP-related	634	2e-066
AT4G23670.1 major latex protein-related / MLP-related	632	4e-066
AT4G14060.1 major latex protein-related / MLP-related	628	1e-065

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	14			47%


7	13			43%


12	3			10%

Unigene Members	Member information