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Information for unigene UN22955
| FASTA Sequence |
| Unigene ID: UN22955 | Length: 1485 |
| SNP | GGACTTTTAAATTTGTCATAGATCATTAAAATAACAAAAAAGCAAAAATAAAGATATTATCACCATGGCTGGCGCAAGAAGTTTGG
TTGCCAAGGCAAATCATATTAATGTAGGCCCATTAATTTTAATGGCCTTGGTGTTTGGTTCTTGCGTAGCTAGTGGTGAATATCTA
GGTGACCGCCGTGGCCTTGTTGCTGTTGCCGGCAACCCTGCGGTCTTTGATATTACTAAGTTTGGAGCAGTGGGGAATGGTGCCAC
CAATTCTTTTAAGGCGTTTTTAAACACATGGCTCCAAGTGTGTGCCAGTCCTGTACCAGCAACGCTACTAGTCCCTAAAGGTGAGT
TCTTGACTGGTCCAGTAATTTTTGCTGGTCCATGCAAGAGCAAAGTGACCATCGATGTTCAAGGCACAATCACCGCTACACCAAGC
GGATACGCGACCCCTGAATGGTTCTTATTCGAACATGTCGACAATGTCCTCGTCACCGGACCCGGCACATTCCACGGCAAAGGTGA
AGCCGTTTGGAAAGCAGATGGCTGTGGCAAAAAGGTCGAGTGCAATCTTCCTCCAACGTCTCTAAAATTCAGAAACATAGTAAATC
TTGAAGTCACCGGTATTAGCTCGGTCAACGCAAAGGCCTTCCACATGTTCTTGGTGAAAACTACGAATGTCAACATCCACAACATC
AATATTGTTGCCCCTGCTGAAAGTCCCAACACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCGTTGACAGTAATAT
AGGGACAGGAGACGATTGTATTTCTGTCGGTCGTGGTTCCAACAATGTAACTGTCGAACGCGTGGTTTGTGGCCCAGGACACGGCC
TAAGTGTCGGTAGTCTCGGAAAGTACCCGAACGAGGAGGATGTTAGCGGCATTCACTTTAAGAGCTGCACGATGAAAGGTACCGAC
AATGGTCTTAGAATCAAGAGTTGGGGTGGTTCGTCTCCAAGCAAGGCTACGGACATTAAGTTTGAAGATATTATAATGGAAAGCGT
GAAGAACCCAATCATCATTGACCAAAACTACGGCTCAAGAGGCGGAGAATCAAGAGTTGCCATTAGCGATGTGTTGTTCAAGAACG
TAAGAGGAACAACAATTACAAAAGATGAAGTTCAGATCATGTGCAGCAAAGCAGTACCGTGCGCAGGAGTCAGCGTCATTGACGTG
AACTTGAACTTCATTGGTAACAAAGGAGGACATCCCTCGTCGTCAGGAGGTTTGGTCGGAGCTCTTTGTACCAACGCCAACGTTAT
CTTCGGTGGAAAACTTAGTTTCCCTATGTGTCCCAAATAAGCTTTTTGATATAATTAATTTTATAACAAAAAAAGTCAAAAGTTTC
CACAAACATTTGTTTTGTTTGTGAGTTAACTAGATTGTGACTTTATCAACAATTTATTAATTCATTGGAATATTTGACTTTTGAAA
GAAAAATCCACTGCTTTATTCCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABW24665 pollen-specific polygalacturonase [Brassica rapa subsp. campestris] | 1932 | 4e-214 |
| XP_002892124 hypothetical protein ARALYDRAFT_887420 [Arabidopsis lyrata subsp. lyrata] | 1884 | 1e-208 |
| NP_171778 polygalacturonase 4 [Arabidopsis thaliana] | 1869 | 8e-207 |
| XP_002301489 predicted protein [Populus trichocarpa] | 987 | 2e-104 |
| CBI36886 unnamed protein product [Vitis vinifera] | 986 | 2e-104 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P49062 Exopolygalacturonase clone GBGE184 | 1869 | 3e-208 |
| P35339 Exopolygalacturonase | 812 | 1e-085 |
| P26216 Exopolygalacturonase | 789 | 6e-083 |
| P35338 Exopolygalacturonase | 789 | 6e-083 |
| P35337 Polygalacturonase | 786 | 1e-082 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8VPP7 Pollen-specific polygalacturonase | 1932 | 3e-214 |
| B9GSC9 Predicted protein | 987 | 1e-104 |
| B9GSC8 Predicted protein | 904 | 4e-095 |
| B9P6I2 Predicted protein (Fragment) | 886 | 5e-093 |
| A5AMR9 Putative uncharacterized protein | 875 | 1e-091 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G02790.1 PGA4 (POLYGALACTURONASE 4); polygalacturonase | 1870 | 2e-209 |
| AT3G14040.1 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase | 790 | 4e-084 |
| AT3G07820.1 polygalacturonase 3 (PGA3) / pectinase | 787 | 9e-084 |
| AT3G07830.1 polygalacturonase, putative / pectinase, putative | 786 | 1e-083 |
| AT5G48140.1 polygalacturonase, putative / pectinase, putative | 783 | 3e-083 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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