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Information for unigene UN22985

FASTA Sequence
Unigene ID: UN22985Length: 829  SNP
TTTTTTTTTCGGGTGGTGTTAGATCGGATCTCAATCATCAGAATTCACAACTCATAATAAGCAAATAAATCTCAGAACTCATATTC
GATTCGATTCCAGGAGTAAGGGGAGGGTTTTACGATCACTTCGACAAAAATATGAAAGAAAGGAAATCTGCCAAGCTGAATCATCA
AGACAACGATGAACAACTGATCCACCACGAAAACAGTCACCTGGGTTCCTTCAAATTCGCCAAATTGTTCGACTCAGAAGCTTCCT
GGGACAAGGATCAACTAGGAGATGTGTTGCATTGGATCAGACAATTTGTTGGATTGCTCTGCGGATTGATTTGGGGTGCTATACCT
TTGGTTGGTGGCGTTTGGCTTCTTCTGTTTCTGGTGATCTCCTCAGGCATAGTATATGGTTACTATGCATTGATTCTAAAGATCGA
TGAAGAAGACTATGGTGGTCATGCAGCTCTTCTCCAGGATGGTTTATTTGCTTCTCTAAGTGTATTCCTGCTTGCGTGGATTCTGG
TGTATAGCTTGTCTAGCTTCTGATAGAGACGCACTGTGTCTTGCGCTTAAGTGTTGCTTTAGCCTCTGCTCGGAAGAAGTTTAGAA
GAATATGCCTTTCTTGGTTTCTCCGATTACAGTCTTCTTTACGCTGCTTTTGATGCTTGCTTTTGTGTTTCTTAAGATGGGAACTA
GCATTGGTAGATCTTATTGGTTTGCTTTAGTTTTGTCTACTATTTTCTTTTTTTTATTTTGTTTAAAAAACTAAAAGTATTATGTG
TTCATGCTACAAAATGGTAACTTTTTCCAGGGTTTATCTAGATTTGGGCCAAGAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002862803 rab5-interacting family protein [Arabidopsis lyrata subsp. lyrata]6086e-061
NP_565679 Rab5-interacting-like protein [Arabidopsis thaliana]6014e-060
XP_002866329 hypothetical protein ARALYDRAFT_919171 [Arabidopsis lyrata subsp. lyrata]5225e-051
NP_200749 Rab5-interacting family protein [Arabidopsis thaliana]5153e-050
BAF01013 putative Rab5-interacting protein - like [Arabidopsis thaliana]5111e-049

Swiss-Prot top hits (Blast detail)Scoree value
Q9CQT9 Uncharacterized protein C20orf24 homolog2321e-018
Q9BUV8 Uncharacterized protein C20orf242061e-015

TrEMBL top hits (Blast detail)Scoree value
O81071 At2g29020/T9I4.106012e-060
Q6NKV4 At5g594105152e-050
Q0WPD6 Putative Rab5-interacting protein-like5117e-050
B9HPG3 Predicted protein5091e-049
B9GJM3 Predicted protein5001e-048

Arabidopsis top hits (Blast detail)Scoree value
AT2G29020.1 Rab5-interacting family protein6021e-062
AT5G59410.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rab5-interacting (InterPro:IPR010742); BEST Arabidopsis thaliana protein match is: Rab5-interacting family protein (TAIR:AT2G29020.1); Has 154 Blast hits to 154 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).5161e-052

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  17%
 
94  33%
 
125  42%
 
201  8%

Unigene MembersMember information