Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN23046

FASTA Sequence
Unigene ID: UN23046Length: 1133  SNP
ATAAGTTTTTTTCAGGAAAACTAGTAGATATATTAGTTTATAGTTATTTGAAATCTATGATACGTTTATGTAAAACATTAGCGTGT
CATTTTACATCAATTAATAAAAAGAAACATTAGGTTGACAATTGTAAATTATATTTTTTAAGAAAATTAATTGTGTTTGTTGAGTT
ACTATTAATTTATAGTTATTTAAGATTTAAAATCTATAATAAAATGATACATTTATGTATAATATGAGTGTGTCATCTATAATAAA
TTTTGCAGATTTTTAAATGTTATAAATTTTTAACTATTTATTAGTATGAATACTTGTGACTTAGAAATAATTCATGTTAATATCTT
ATGAAAAAGCAAGATGCTAATATTTATTGACGGATTTCGTGGTGTTTTGCTAATAGAAGATAATGTGTTACTTTCTTAGAAACTTG
AGTTTTGTTTTTCCTGTCTAGTCATTGGTGTTCTTCATAGTGCTCAAACAATCCTCCGTTGTTTCTTCTGCATATATTTACTAATT
TAATATATATACATTAGTGAAAAGCAAAGTCAATAAAATACTGCAGAATATACATTAAGACACGTACAAAGAAGAAACTCTCAAAT
CTCCAAACACTAAGCCAAAACTCTAATATACTAAGAGCAGGACTTGGCTATACTTGTTTCTCCGCTGGTTGATTCAAGAGGTAGAA
AAAGTCTACAATCATAGCAAATGGGATGATCACAACACAACACAGCACAGATACACAAAATATTAAAATCTTTCTTCATACATCAA
AGAGACGCAAGTAATGGAGTCAATGAAGATGATGGTTGTTTTCATGGTCGTTGCAGTGGCTTTCTCAGCCGTAGGACAAGCGGCGG
CTGCCACCGTGGAAGCTCCAGCTCCAAGTCCAACCTCTGATGCTGCCATGTTCGTACCGGCATTGTTTGCATCTGTTGTTGCTTTG
GCATCAGGTCTTCTCTTTTGAGTCAAAACAAATATTTCATTTTTCTCCATTAGTTTTATTGTTTCGTTCATGAGTTTGTGTGTGAT
TTGATTCTATTTTGTATAGAGCGTTGTATTATTCTTAATGTAACCATCTGTTTCTATATTATATCATCATTCATCAGACTGTTTAT
GAATTCGATTACCTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABB97032 unknown [Brassica rapa]2664e-021
NP_564686 arabinogalactan protein 21 [Arabidopsis thaliana]2128e-015
XP_002894500 hypothetical protein ARALYDRAFT_892530 [Arabidopsis lyrata subsp. lyrata]2128e-015
NP_566458 arabinogalactan protein 12 [Arabidopsis thaliana]2064e-014
XP_002882829 hypothetical protein ARALYDRAFT_478739 [Arabidopsis lyrata subsp. lyrata]1974e-013

Swiss-Prot top hits (Blast detail)Scoree value
Q9C8A4 Arabinogalactan peptide 212123e-016
Q9LJD9 Arabinogalactan peptide 122062e-015
Q9STQ3 Arabinogalactan peptide 131676e-011
Q9LVC0 Arabinogalactan peptide 141532e-009

TrEMBL top hits (Blast detail)Scoree value
Q2V609 Putative uncharacterized protein2663e-021
A9PBQ1 Predicted protein1661e-009
B9IPQ7 Predicted protein1606e-009
A9P890 Predicted protein1435e-007
B9GY63 Predicted protein1435e-007

Arabidopsis top hits (Blast detail)Scoree value
AT1G55330.1 AGP212132e-017
AT3G13520.1 AGP12 (ARABINOGALACTAN PROTEIN 12)2071e-016
AT4G26320.1 AGP13 (arabinogalactan protein 13)1684e-012
AT5G56540.1 AGP14 (ARABINOGALACTAN PROTEIN 14)1542e-010
AT4G23640.1 TRH1 (TINY ROOT HAIR 1); potassium ion transmembrane transporter1147e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
124  21%
 
82  11%
 
69  47%
 
93  16%
 
101  5%

Unigene MembersMember information