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Information for unigene UN23051
| FASTA Sequence |
| Unigene ID: UN23051 | Length: 1174 |
| SNP | GGAAACCAGAAAAGAAAAATCCCCAAATCTCAATCGGTTACAATGGCGTCATCGTCTTCGAACAGTTCGGGAGGCGGTTACGAGAT
CCCGTGGGTGGAGAAATACAGGCCGAGCAAGGTGGTGGATATCGTCGGGAACGAAGATGCTGTCTCGAGGCTTCAAGTCATCGCTC
GCGACGGAAACATGCCCAATCTTATCCTCGCCGGTCCTCCTGGAACGGGTAAAACCACTAGCATTTTGGCTCTTGCTCACGAGCTT
CTCGGCCCTAATTATAGAGAGGCTGTTCTCGAGTTGAATGCTTCTGATGATAGGGGTATCGATGTTGTTAGGAACAAGATTAAGAT
GTTTGCTCAGAAGAAAGTCACACTTCCTCCTGGGCGCCATAAGGTTGTCATTCTTGATGAAGCTGACAGCATGACGTCTGGAGCAC
AGCAAGCCTTGAGGAGAACGATTGAGATCTACTCAAACTCTACCCGCTTTGCACTTGCTTGTAACACCTCCGGCAAGATTATTGAG
CCTATCCAGAGTAGATGCGCTTTAGTTCGATTCTCTAGGTTATCTGATCAGGACATACTTGGCCGTCTCATGGTCGTCGTTCAAGC
TGAGAATGTTCCTTATGTACCTGAAGGCCTTGAGGCGATAATCTTCACAGCTGATGGTGATATGAGGCAAGCGCTGAACAACTTGC
AAGCCACATTCAGTGGGTTCCGCTTTGTCAATCAAGAAAACGTCTTCAAGGTCTGTGACCAGCCTCACCCGCTTCATGTCAAGAAC
ATGGTTCGAAATGTGTTGGAAAGTAAGTTCGACGATGCTTGTCACGGCATGAAGCAGCTATACGATCTAGGCTACTCTCCCACCGA
CATTATCACAACGCTTTTCCGTATAATAAAAAATTATGATATGGCTGAGTATCTGAAACTTGAGTTCATGAAGGAGACTGGGTTTG
CTCATATGAGAATCTGTGATGGAGTTGGATCATACCTCCAGCTATGTGGTCTTCTTGCTAAGTTGGCCGTTGTTCGTGAAACAGCG
AAATCAGCTTAGGCCAGTTAGATTTCACTTATCACCACCAGTAATGAACCTGTGACTGGTTTGTATGTTTAATTCGAGTTGGTTAA
CTCTCGGTTGTTTGACAGTTTGGATAACATCTTGCAATGCAAAGCTTTTCGAAAAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002886430 hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp. lyrata] | 1626 | 9e-179 |
| NP_176504 replication factor C 2 [Arabidopsis thaliana] | 1591 | 1e-174 |
| XP_002509739 replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] | 1588 | 2e-174 |
| XP_002283246 PREDICTED: hypothetical protein [Vitis vinifera] | 1552 | 3e-170 |
| XP_002304476 predicted protein [Populus trichocarpa] | 1545 | 2e-169 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P35250 Replication factor C subunit 2 | 1162 | 2e-126 |
| Q9WUK4 Replication factor C subunit 2 | 1156 | 1e-125 |
| Q05B83 Replication factor C subunit 2 | 1155 | 2e-125 |
| Q641W4 Replication factor C subunit 2 | 1153 | 3e-125 |
| P53033 Replication factor C subunit 2 | 1152 | 4e-125 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9CAM7 At1g63160 | 1591 | 7e-175 |
| B9RC55 Replication factor C / DNA polymerase III gamma-tau subunit, putative | 1588 | 2e-174 |
| B9GWE8 Predicted protein | 1545 | 2e-169 |
| B8AT41 Putative uncharacterized protein | 1504 | 9e-165 |
| Q01JP2 OSIGBa0139P06.6 protein | 1504 | 9e-165 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G63160.1 replication factor C 40 kDa, putative | 1591 | 4e-177 |
| AT1G21690.1 emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding | 513 | 4e-052 |
| AT1G77470.1 replication factor C 36 kDA, putative | 493 | 8e-050 |
| AT1G21690.2 emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding | 491 | 1e-049 |
| AT5G27740.1 EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding | 180 | 2e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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