RadishBase

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Information for unigene UN23082

FASTA Sequence

Unigene ID: UN23082	Length: 1114		SNP
TCCTGCAAGTAAAGTTTCGGGTTTCAAACAACAAGCAAGCTGTGACTTGCTACTTGTCACAGATAGCAGTGACAAACAAGCACGGT TAAAGCAGCAACATGCAAACAGAACAGTCACATGACCCAGGGACATAGAAACAAACTAGACCTCAAAAGATTCAAGTTAAGAGTCT TCCCCCAAATAAGATCCTTGATTGCATAATCTATTTTGGTTCAAAAACAACTCGCTCTATTCCAAAACGGAACAATCTCAATATTC CCCAATATTAGTTCTAAAACACTCGATTCATTCCATATGTAACATCAACGCAACATAGAATAAAAACCAAAACAAAGAAGCGAATC AGCAAAACCACGGCAGGACACATCTTGGAACATCTTTTGTTTACTCAAAAGCGTCATCATCATCATCTGGGGAGAGGCTGAGCAGC GGCGGCAATGAGATCAGCCTCGTTCTTCTGCTGCTCGGCAACGTCGATGTGAACCTCAGGGGGAGCAAGAGCTGGTGACTCAACAA AGTGAAGGTTAGGGTCGCCTGCAAGTTTCCTAGCGAGGTACAAGAAGGGCTTCTCGAAGTTGTAGTTACTCTTGGCAGATATCTCA TAGTACTGCAGATTCTTCTTCCTGTGGAACGTCACCTGCTTGGCCTTGACTTGCCTGTTCTTGACATCGACTTTGTTCCCGCAGAG AACAATAGGGATGTTCTCACACACCCTGCATAGATCACGGTGCCATGTCGGAACGTTCTTGTATGTGAGCCGCGCTGTGACGTCAA ACATAATCACTGCACATTGACCATGGATGTAGTAACCATCCCTAAGGCCACCGAACTTCTCTTGACCAGCAGTATCCCAGCAGTAG AAACGGATCTTGCCACAGTTTGTGAAGAAATCCAAAGGATGAACCTCCACACCAATGGTAGGTTCATACTTCTTCTCAAACTCTCC AGTAAGATGTCTCTTGACGAAAGTGGTTTTCCCTGTGCCTCCGTCACCAACAATGACGAGCTTGAAGCTAGGGTAATCGACGGTTT GCTGGTTTGGTAGAGCCATGTTTTCGGAGTCGCAGAGAATCAGACGACGTGAGCTTTTAGATAGTAACAAGGAGAGAAGCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABD17866 etiolation seedling like-RAN2 small Ras GTP-binding nuclear protein [Brassica napus]	1148	2e-123
CBI21000 unnamed protein product [Vitis vinifera]	1127	6e-121
NP_197501 GTP-binding nuclear protein Ran-1 [Arabidopsis thaliana]	1125	1e-120
NP_197502 GTP-binding nuclear protein Ran-2 [Arabidopsis thaliana]	1125	1e-120
CBI28152 unnamed protein product [Vitis vinifera]	1125	1e-120

Swiss-Prot top hits (Blast detail)	Score	e value
P41916 GTP-binding nuclear protein Ran-1	1125	4e-122
P41917 GTP-binding nuclear protein Ran-2	1125	4e-122
Q8H156 GTP-binding nuclear protein Ran-3	1105	9e-120
P41918 GTP-binding nuclear protein Ran-A1	1102	2e-119
A2WSI7 GTP-binding nuclear protein Ran-1	1095	1e-118

TrEMBL top hits (Blast detail)	Score	e value
A9X4K1 Etiolation seedling like-RAN2 small Ras GTP-binding nuclear protein	1148	2e-123
A9X4K0 Putative RAN2 small Ras GTP-binding nuclear protein	1125	7e-121
Q8S2Z7 GTP-binding protein	1113	2e-119
A9X4J9 Putative RAN2 small Ras GTP-binding nuclear protein	1110	4e-119
C6SW66 Putative uncharacterized protein	1108	7e-119

Arabidopsis top hits (Blast detail)	Score	e value
AT5G20020.1 RAN2; GTP binding / GTPase/ protein binding	1125	4e-123
AT5G20010.1 RAN-1; GTP binding / GTPase/ protein binding	1125	4e-123
AT5G55190.1 RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding	1105	8e-121
AT5G55080.1 AtRAN4 (Ras-related nuclear protein 4); GTP binding / GTPase/ protein binding	790	3e-084
AT5G39620.1 AtRABG1 (Arabidopsis Rab GTPase homolog G1); GTP binding	250	1e-021

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			8%


10	2			8%


7	14			56%


6	4			16%


9	1			4%


8	2			8%

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