RadishBase

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Information for unigene UN23144

FASTA Sequence

Unigene ID: UN23144	Length: 846		SNP
GAAAATAATCATACCATTAAAACACCTTTGAAATCATCATATACAACACATAACAAGGAAAAGCTGAAATCAACAAAGGAAATAAT AAAAAGCCAACAAACTTCCAACAACACAAAAGCAAAAGATGATCATATCATTCAACACAAGAACACATCATGATTTCATATCTTTA ATGATCATCCTTATCCTTCTTTTCCTCCTCTACAGTCTTGGGATGGTAGCCTGGAAGCTTCTCCTTAATCTTCTCCAAGATCCCCT TCTTCTCCGCCGGATGCGCTTCCTCCACCGGAGGAGCAACAACCGGTGCGGCTGGAGCATCTTCAGGCTTCTTCCCGTGTCCAGGA AGCTTCTCCTTCAGCTTATCCATAAACCCTTTCTTCTCCTCCTCCTCTGTCTTCACTTCTCCTTCACTAGTTACCTTCTTCTTGTC CTTCTTCTTCTTCCTCTTCACACCATCTTCGCCTTCTTCCTCGCTTGAGGAGCTTGAAGAGCTGTCGCTGCGGTGAAGCTTCTCGA GGAGACTATGATGCTTCTTCTCTTCTTCTTCTTCCTCGTGTTTAACCTCAGGCGCCGGCTCTGAGACGTGAACCTTTTGCTCAAAC TCAGACGCTATGGCGGTCTCCTCTGGTTTTGTTTCATCTTTCTTCTTCCCCAAGAAATCGAACAGTCCACGATCTGTGACCTCTGT GGCCGCTGCTGATGATTCCTCCGACTCTACCTTTGGCACCTCAACGTTCTTGGTTTCCTCTGCCATAGTTATCGAGAAAAAAGTTT TGTTTGCTCTGCTGATGAGAATACGAAACGATCAAAGTATACTTAAGATGATTTGTAAGAGACGAATGATCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CAA64428 pollen coat protein [Brassica oleracea]	836	2e-087
ABV89609 pollen coat protein [Brassica rapa]	826	3e-086
ABD95987 dehydrin [Brassica juncea]	750	2e-077
NP_177745 dehydrin ERD14 [Arabidopsis thaliana]	675	1e-068
AAG40050 At1g76180 [Arabidopsis thaliana]	675	1e-068

Swiss-Prot top hits (Blast detail)	Score	e value
P42763 Dehydrin ERD14	675	4e-070
P31168 Dehydrin COR47	446	2e-043
Q9XJ56 Phosphoprotein ECPP44	438	1e-042
P42759 Dehydrin ERD10	429	1e-041
P46524 Dehydrin COR410	216	7e-017

TrEMBL top hits (Blast detail)	Score	e value
Q39386 Pollen coat protein	836	1e-087
A8IXD7 Pollen coat protein	826	2e-086
A9X5B5 Dehydrin	750	1e-077
C6EQ93 Dehydrin protein	580	7e-058
A5BUW9 Putative uncharacterized protein	387	2e-035

Arabidopsis top hits (Blast detail)	Score	e value
AT1G76180.1 ERD14 (EARLY RESPONSE TO DEHYDRATION 14); calcium ion binding	678	2e-071
AT1G20440.1 COR47 (COLD-REGULATED 47)	446	1e-044
AT1G20450.1 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding	429	1e-042
AT1G20450.2 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding	401	2e-039
AT1G56660.1 unknown protein	141	3e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	19			53%


12	11			31%


8	3			8%


10	3			8%

Unigene Members	Member information