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Information for unigene UN23175
| FASTA Sequence |
| Unigene ID: UN23175 | Length: 1015 |
SSR | SNP | GGGCCGTAAACTCAAGAAGAAGAAGAAGACGAATCCATGGGTCGTGTCATCAGAGCTCAACGTAAGGGAGCAGGCTCCGTCTTCAA
GTCCCACACTCACCACCGCAAGGGCCCCGCCAAGTTCAGGAGCCTCGATTTCGGCGAGAGAAATGGTTACCTCAAGGGTGTCGTCA
CGGAGATCATCCACGATCCGGGTCGCGGTGCTCCGTTAGCCCGCGTCGCCTTCCGTCATCCTTTCCGTTACAAGAAGCAGAAGGAG
CTCTTCGTCGCCGCCGAAGGTATGTACACCGGACAGTTCTTGTACTGCGGTAAGAAGGCCACTCTCGTTGTCGGAAATGTTCTGCC
TCTCAGATCTATCCCCGAGGGAGCTGTTGTCTGCAACGTCGAGCACCATGTCGGTGATCGTGGTGTGCTCGCTAGAGCTTCTGGAG
ATTACGCTATCGTTATTTCACACAACCCTGACAACGACACGACAAGGGTTAAGTTGCCATCTGGATCGAAGAAGATTGTCCCAAGT
GGATGCAGGGCCATGATTGGTCAAGTTGCTGGTGGTGGAAGAACTGAGAAGCCGATGCTCAAGGCGGGTAACGCGTACCACAAGTA
CCGTGTGAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCTGTTGAGCATCCTCACGGAGGAGGTAACCATCAAC
ATATCGGTCACGCCAGTACCGTCCGTCGTGATGCACCACCCGGGCAAAAGGTTGGTCTTATTGCTGCAAGGAGGACTGGTCGTCTC
AGAGGTCAAGCTGCTGCTCTTGCCTCCAAGCAAGAATAAGGAGGGGAAGCTTCATGATGATGAAACTGTTTACTTTTGTTGGATTT
TTGCTGAGACCTTGTTTTGAATCCTTTAGATTTTCTTTAATCTTCTTTGAGACCTTTGGCTTCAGGATCAAACCTCCACATTATCA
TTTTAAATTTCAGGATTCAGTTTTGATTTCTTTGATCTCAGATTATCATCTATAAGGATCTAATTATAG
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002869043 60S ribosomal protein L8 [Arabidopsis lyrata subsp. lyrata] | 1344 | 4e-146 |
| NP_195336 60S ribosomal protein L8-3 [Arabidopsis thaliana] | 1339 | 1e-145 |
| XP_002884102 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1329 | 2e-144 |
| NP_179393 60S ribosomal protein L8-1 [Arabidopsis thaliana] | 1324 | 7e-144 |
| XP_002327761 predicted protein [Populus trichocarpa] | 1324 | 7e-144 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q42064 60S ribosomal protein L8-3 | 1339 | 6e-147 |
| P46286 60S ribosomal protein L8-1 | 1324 | 3e-145 |
| P29766 60S ribosomal protein L8 | 1296 | 6e-142 |
| P25998 60S ribosomal protein L8 | 1269 | 8e-139 |
| Q4PSL7 60S ribosomal protein L8-2 | 1205 | 2e-131 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PCT0 Predicted protein | 1324 | 5e-144 |
| A9PBZ5 Predicted protein | 1319 | 2e-143 |
| C6TDL5 Putative uncharacterized protein | 1307 | 5e-142 |
| A5AW13 Putative uncharacterized protein | 1304 | 1e-141 |
| B9SK07 60S ribosomal protein L8, putative | 1301 | 2e-141 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G36130.1 60S ribosomal protein L8 (RPL8C) | 1340 | 4e-148 |
| AT2G18020.1 EMB2296 (embryo defective 2296); structural constituent of ribosome | 1325 | 2e-146 |
| AT3G51190.1 structural constituent of ribosome | 1207 | 1e-132 |
| ATCG00830.1 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | 264 | 2e-023 |
| ATCG01310.1 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | 264 | 2e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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