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Information for unigene UN23181
| FASTA Sequence |
| Unigene ID: UN23181 | Length: 2566 |
SSR | | CTCCGCAGCCGCAGCAAGGAGGCTATCACCATCCACAGACGCTTGAAGAAGTACGAACCCTTTGGATCGGAGATTTGCAGTACTGG
GTCGACGAGAACTACCTCTCTTCCTGCTTCTCCCAAACCGGCGAGCTTGTTTCAGTCAAGGTGATACGTAACAAGATCACTGGCCA
GCCGGAAGGGTACGGTTTCATAGAGTTTGTATCTCACGCAGCAGCAGAGAGAACGCTTCAGACGTATAACGGGACGCTGATGCCTG
GAACGGAAGTAGCCTTCCGTTTAAATTGGGCTTCTTTTGGTTCAGGCCAGAAAGTAGATGCTGGACCGGATCATTCTATCTTTGTC
GGAGACTTAGCGCCGGATGTTACTGATTATCTCCTTCACGAGACGTTCCGTGTTCACTACTCTTCTGTTAGAGGTGCCAAGGTTGT
TACTGATCCGAGTACTGGACGGTCGAAAGGTTACGGGTTTGTGAAGTTCGCAGACGAAAGTGAGAGGAACAAGGCGATGTCTGAAA
TGAATGGTTTGTATTGCTCGACGAGGCCTATGCGTATCAGCGTTGCAACGCCTAGAAAAAACGTTGGGGTACAGCAACAATATGTC
ACCAAAGCTGCGTACCCGGTACCAGCACCAGTCCAATCTGCAGTTGCTGCTCCAGCATACGTTGCTCAACCAGCGCAGTGCTCGCA
CCTGAAATGACATCACCTGTACGACAGTTTTGATTGCGAATCTGGACCCAAATGTTACAGAGGAAGAGCTGAAGAAAGCGTTCTCG
TCGTTAGGAGAGGTTATTTATGTCAACATACCTGCAACAAAGGGATACGGTTATGTTCAATTCAAAACTAGGCCTTGTGCCGAAGA
AGCCATTCAAAAAATGCAGGGACATGTGATTGGTCAACAACCAGTTCGCATCTCTTGGAGTAAAAATCCAGGACAGGATGGTTACG
CCACACAAGCAGATCCAAGTCAGTGGAATGCGTATTACGGTTACGGACAAGGTTATGACGCCTATGCTTATGGGGCAGCAGCTCAA
GACCCATCCTTGTACGCATATGGTGGATATGGCTATCCTCAGTATCCACAACAGGGTGAGGCTACACAGGAAGTTTCAAACCCTGT
GGCTGGTGGAGTTGCAGGAGCAGAACAAGAGTTATATGATCCTATGGCCACTCCTGATGTAGAAAAGTTAAATGCTGTTTCACTTT
CGGTTCACGCAAATGCCATATTAGGACGGCTATTGTGGCAGCGTACCTCAGCACTCTCATCACGTTTGGGAAAATGATCGAGACTA
GGACCGGTGGTTTTTTTTTTGGAGATGTTTAATGTGTTAATTCACTGCTCTTTGTTTGATTGTCTGAGATTTTTAAAATGTCATGT
ACAAGTAGGATTGTAGTTACAATCCTAAGTCATGAATCTTACATCTTTCTGGAAACTATGATGCGCTTTGCTCCTCTATTTACTTT
TAAATAAAGAAGTCTCTGAAGAAGAAGAAAGGTTTTATAACGTCACAAAGGAAACAGTGATGAAAAATGATTCCCAACGCTTGTAT
ATTCTAATGTCAAATGATTTCCCGAATACGATTTGCAATTATTTGGATAAAGAGAGCAAATTGTATGGGATGGCTCTAGAATCTCT
CTGATGTAGTAGCAGTTTCAGTAAGTAGGAATTGATGGGTCAACCTTGAGAGAATAGGCTTGTATTCCACCGGCTATATTGTACAC
ACTCTTGAAGCCCTGAGACTGCAGCCAGTTCGCAACCTGCAACGACCTGCCACCAACCTTACACAGGACGAATGTATCCTTCTCAG
GATTCAGCTTTGAAGTGATGTCTGGTGCCCAGGTTCCGAATTGGCGGAGCGGAAACACTTTAAATCCTGGCAAGGATGCTGTGGCT
ATCTCGTCAGGTTCTCTGACATCAATCAACTGAGCCTCGTCCATGAAAACTGGATCTTGCATTTTGGAATGCAGCTCCTCCACCTG
GATGTCTTTCACAGGTTCCCTCTCAGATAGAACTTGCAACAAGTGCCAGCCAAATTGGGTTTTACACCTGACCACATGATTCGGCT
CTGCTTTAAACGCAGCTTCCTCAAACTCTGGTACCATTTGACCAAGTTTAACCCATCCAAGTATACCACCCTCCTTTTTAGATGGA
CAAATCGAGTACTCAGCTGCAAGATCACTCATATCCTCTCCATCCAGGATTCGCTTCTGGAGTTCAGCAAAGAGCTCAGAGTCACC
CTCCTTAACAAGCACATGCTGCACCAGAATCTCTCTGCTTTGACTACTACTACTACTCCCACTGCTAAACGAAGCTCTCGCTTTGA
GAGCCGAGAAGCCAGAGAGTCTCGTAGGGTACATGGAAGGAAGAACGCGTGGTCGGACTCTGAGCGAAGAGATGTGTCTGCCGAGA
AGTGAACGAGAGAACGTGGAGAAGCGGCGTGGATGGAGAGGAGGTGATGCGAGAGCGAGAGTGTGGGGGACGGAGAGTCTCAGTGC
GGCGGAGAAAGAAGACGCCGCCGGAGATGATACCGCAGAGAGATTGCCGGTGATTCTTAACATTTTGGGTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568372 rhodanese and PPIC-type PPIASE domain-containing protein [Arabidopsis thaliana] | 1243 | 6e-134 |
| AAM63512 peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis thaliana] | 1228 | 3e-132 |
| XP_002873944 hypothetical protein ARALYDRAFT_488823 [Arabidopsis lyrata subsp. lyrata] | 1226 | 6e-132 |
| NP_197436 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1074 | 2e-114 |
| XP_002871881 hypothetical protein ARALYDRAFT_488820 [Arabidopsis lyrata subsp. lyrata] | 1051 | 1e-111 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q80VC6 tRNA selenocysteine 1-associated protein 1 | 412 | 6e-039 |
| Q5R462 tRNA selenocysteine 1-associated protein 1 | 403 | 7e-038 |
| O13759 RNA-binding post-transcriptional regulator csx1 | 396 | 4e-037 |
| O60176 Uncharacterized RNA-binding protein C23E6.01c | 396 | 4e-037 |
| Q4KM14 tRNA selenocysteine 1-associated protein 1-like | 381 | 2e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q93WI0 Putative peptidyl-prolyl cis-trans isomerase | 1243 | 4e-134 |
| Q8LCM5 Peptidyl-prolyl cis-trans isomerase-like protein | 1228 | 2e-132 |
| Q8VXZ9 Putative DNA binding protein ACBF | 1074 | 2e-114 |
| O23727 Peptidyl-prolyl cis-trans isomerase | 1032 | 1e-109 |
| B9HNV7 Predicted protein (Fragment) | 899 | 3e-094 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G19370.1 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein | 1244 | 2e-136 |
| AT5G19350.1 RNA-binding protein 45 (RBP45), putative | 1074 | 9e-117 |
| AT5G19350.2 RNA-binding protein 45 (RBP45), putative | 1049 | 7e-114 |
| AT3G19130.1 ATRBP47B (RNA-binding protein 47B); RNA binding | 657 | 2e-068 |
| AT5G54900.1 ATRBP45A (RNA-binding protein 45A); RNA binding | 656 | 3e-068 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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