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Information for unigene UN23185
| FASTA Sequence |
| Unigene ID: UN23185 | Length: 1493 |
| SNP | GCGGGTAAATACCCGATTCCTAAGACCAAGCTTACTCTTGAGAGGTTGAGAGAGTTTCTTCATCTTCGTGCAAGGACCAACTCGAT
CTCAGCTATTGCAAGAATCAGACATGCGCTTGCTATGGCTACACACACCTTCTTTGATGAATAAGGTTTCCTTTACGTTCAGACTC
CGATTATCACCACAAGTGACTGCGAAGGAGCTGGTGAGATGTTCCAGGTGACTACTCTGATCAGTACAACCGAGAAGCTTGAGAGG
GAACTCATTGAGAACCCTCCTCCTACGGAGGCCGACGTCGAAGCTGCCAGAGTCGTCGTCAAGGAGAGAGGCGGAGCTGTGGCGGA
GCTCAAAGCTGCTAAAGCGAGCAAGGAAGCGATCGCTGCTTCAGTTGCTGAGCTCAACGATGCGAAGACTCATTTAGCTAGGACTG
AAGAGAGGTCGAGGCTCAAGCCTGGTTTGCCTAAAGTCGATGGGAAGATTGATTACTCTCAAGATTTCTTTGGTCGTCAAGCTTTC
TTGACGGTTTCTGGGCAGTTGCAAGTGGAGACTTATGCTTGTGGTCTTAGCGATGTGTACACGTTTGGTCCCACTTTCAGGGCGGA
GAACTCTCACACCTCAAGGCATCTTGCTGAGTTCTGGATGGTTGAGCCTGAGCTTGCTTTCGCTGATCTTGAGGATGATATGAACT
GCGCAGAGGCATATGTGAAATACATGTGCAAGTGGCTGCTTGAGAAGCGTTATGATGATATGGAACTGATGGCTAAGAACTTCGAC
AAAGGCTGCATTGACAGGCTGAAACTCGTTGCCTCGACTCCGTTTGGTCGTCTAACATACACGGAAGCGATAAAGATACTTGAGGA
AGCTGTCGCTAAAGGAAAGAAATTTGATAACGATGTGGAATGGGGTATCGACTTAGCATCTGAGCACGAAAGATACTTGACAGAGG
TTGTGTTTCAGAAGCCACTTATTGTCTACAACTACCCGAAAGGAATCAAAGCTTTCTACATGAGACTTAACGACGATGGAAAGACT
GTTGCTGCCATGGATGTCCTCGTTCCGAAGGTGGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGTATTGATGTCATCATGGA
AAGGCTGGAGGAGATTGGTCTACCAGTGGAGCCATACGAGTGGTACTTGGACTTGAGACGTTACGGAACAGCGAAGCATTCAGGAT
TTGGACTTGGGTTCGAGCGTATGGTTCTGTTTGCTACAGGGATGGACAACATCAGAGACGTTATTCCCTTCCCTCGTTATCCTGGA
AGAGCTGATCTTTGAGATCACCTCTGCACCAAAATTGCAAACATACTTTTATTGCTTTATGTTGCTGGGTCCGGTTTATATTACCG
GTTTCGGTTTGCTATACTTTTTTAAAGTTTTTGCCTTGTAATGATTGAAATGTTACTTTATAGATCTACATATGGAACTGGTTTTG
TTGGGTTATCTAGAGAAATCAATTTTCAGCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200479 asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] | 1944 | 2e-215 |
| XP_002864474 EMB2755 [Arabidopsis lyrata subsp. lyrata] | 1933 | 3e-214 |
| XP_002330501 predicted protein [Populus trichocarpa] | 1834 | 9e-203 |
| NP_177254 asparaginyl-tRNA synthetase, cytoplasmic 3 [Arabidopsis thaliana] | 1812 | 3e-200 |
| XP_002514175 aspartyl-tRNA synthetase, putative [Ricinus communis] | 1558 | 1e-170 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SW96 Asparaginyl-tRNA synthetase, cytoplasmic 1 | 1944 | 7e-217 |
| Q9SSK1 Asparaginyl-tRNA synthetase, cytoplasmic 3 | 1812 | 1e-201 |
| Q481G3 Asparaginyl-tRNA synthetase | 961 | 7e-103 |
| A0KIC3 Asparaginyl-tRNA synthetase | 958 | 2e-102 |
| A1JMN8 Asparaginyl-tRNA synthetase | 948 | 2e-101 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A4FVR0 At5g56680 | 1944 | 1e-215 |
| B9N5I4 Predicted protein | 1834 | 6e-203 |
| B9RKD1 Aspartyl-tRNA synthetase, putative | 1558 | 7e-171 |
| C1FJ14 Predicted protein | 1407 | 2e-153 |
| C1N144 Predicted protein | 1406 | 3e-153 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G56680.1 SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding | 1945 | 5e-218 |
| AT1G70980.1 SYNC3; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding | 1813 | 9e-203 |
| AT3G07420.1 NS2; asparagine-tRNA ligase | 1017 | 2e-110 |
| AT4G17300.1 NS1; asparagine-tRNA ligase | 941 | 1e-101 |
| AT1G68420.1 asparaginyl-tRNA synthetase-related | 279 | 7e-025 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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