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Information for unigene UN23186
| FASTA Sequence |
| Unigene ID: UN23186 | Length: 1593 |
| SNP | GGGGACTAAGAGAGAGAGGAGGGTGAATGATGTTGCGCAGGATATCTGCAAGCTCTTTAACGTGGACCCTGAGGCGAATATTAAGT
TTGTGGAGAACAGGCCTTTTAATGACCAGAGGTACTTTCTTGATGATGAGAAGCTTAAGATCTTGGGATGGTCGGAGAGGACTAGT
TGGGAAGAAGGGTTGAAGAAGACGATGGAGTGGTACACTCAGAACCCGGATTGGTGGGGTGATGTCTCTGGAGCGTTGCTTCCCCA
CCCGAGGATGCTGGTGATGCCTGGTGGGAGGCATTTTGATGGGTCTGAAGAGAACTCTGGAGCAGTGGCTTTATCCGGGAACTCGA
GCCAGAGCAGCCAGATGGTGGTTCCTACACCTAGGAGCAGTGGCTCCGCTCAGAGCCCTTCGCTGAAGTTCTTGATATATGGTAAG
ACGGGATGGATTGGGGGTTTGCTTGGGAAGATTTGTGAGAAGCAGGGGATTGCTTTTGAGTATGGGAAAGGGCGGCTTGAGGATCG
GTCATCCCTCTTGCAAGATATTGTGAATGTTAAGCCTACCCATGTCTTCAATGCTGCTGGTGTGACAGGGAGACCTAATGTTGACT
GGTGCGAGTCTCACAAAACGGAGACAATCCGTGCCAATGTTGCAGGCACTTTGACTCTGGCTGATGTCTGCAGAGAGCACAGTCTC
CTGTTGATGAACTTTGCTACTGGTTGTATATTCGAGTATGATGAAAACCATCCGCTTGGTTCAGGCATTGGCTTCAAAGAAGAAGA
CACACCTAACTTCACTGGTTCTTTCTACTCAAAAACCAAAGCCATGGTTGAGGAGCTGCTTAAGGAGTTTGATAACGTATGCACTC
TAAGGGTTAGGATGCCGATTTCCTCTGATCTGAACAACCCGAGAAACTTCATCACCAAGATTTCCCGGTACAGCAAAGTAGTGAAC
ATCCCAAACAGCATGACCGTGCTGGACGAGCTTCTTCCAATCTCGATAGAGATGGCGAAAAGAAACCTGAAAGGGATTTGGAACTT
CACCAACCCTGGTGTTGTGAGTCACAATGAGGTCCTGGAGATGTACAGAGACTACATCGACTCAGACTTCAAATGGGCGAACTTCA
CACTGGAGGAGCAAGCTAAGGTCATCGTGGCTCCAAGAAGCAACAACGAGATGGACGCATCTAAGCTCAAGAAAGAGTTCCCTGAA
TTACTCTCAATCAAGGAGTCTCTGATCAAATATGCATTTGAGCCCAACAAGAGAACTTGAGGTAATATATAACTTATCTCAGTTTT
CTTTAAGCTGGTTTGTTATTAGTTTCTCCCCTGGAGTCGTAAACCAAAAGCAACTAGCTTTGCCTTTTAGGTTTATCCATTAAGTG
GGGTACATCTAGTTTGGATTCTTATATGTTATTGTTTTGTTGGTATTGTGTTTCTTGTTCCACATTTATAGATAAAAATTTGGTTT
ATGTATTGATATTAATACAAACGGTTAAATCCAGGAACTAGATTTATGGTCTCCAGTTAAAGCGTTTGATGGTAGAAAACTCTCTA
CTTTTATTCATTTTGTATCCATGAAGAAAAGATTGGTACATTTCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002887744 RHM1/ROL1 [Arabidopsis lyrata subsp. lyrata] | 2043 | 6e-227 |
| NP_177978 UDP-glucose 4,6-dehydratase [Arabidopsis thaliana] | 2019 | 4e-224 |
| XP_002331301 predicted protein [Populus trichocarpa] | 1902 | 1e-210 |
| ADB24773 rhamnose synthase [Gossypium hirsutum] | 1901 | 2e-210 |
| ACJ11756 rhamnose synthase [Gossypium hirsutum] | 1900 | 2e-210 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SYM5 Probable rhamnose biosynthetic enzyme 1 | 2019 | 2e-225 |
| Q9LPG6 Probable rhamnose biosynthetic enzyme 2 | 1825 | 5e-203 |
| Q9LH76 Probable rhamnose biosynthetic enzyme 3 | 1824 | 6e-203 |
| Q5UPS5 Uncharacterized protein L780 | 551 | 3e-055 |
| Q8VDR7 dTDP-D-glucose 4,6-dehydratase | 166 | 1e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9N7S0 Predicted protein | 1902 | 9e-211 |
| D2WK32 Rhamnose synthase | 1901 | 1e-210 |
| D2D336 Rhamnose synthase | 1900 | 2e-210 |
| D2WK31 Rhamnose synthase | 1878 | 6e-208 |
| Q94AC9 At1g53500/F22G10_13 | 1825 | 8e-202 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G78570.1 RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic | 2020 | 1e-226 |
| AT1G53500.1 MUM4 (MUCILAGE-MODIFIED 4); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic | 1826 | 3e-204 |
| AT3G14790.1 RHM3 (RHAMNOSE BIOSYNTHESIS 3); UDP-L-rhamnose synthase/ catalytic | 1825 | 4e-204 |
| AT1G63000.1 NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ dTDP-4-dehydrorhamnose 3,5-epimerase/ dTDP-4-dehydrorhamnose reductase | 1297 | 7e-143 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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