RadishBase

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Information for unigene UN23195

FASTA Sequence

Unigene ID: UN23195	Length: 1013	SSR
GGAAAACTAGGAATTAAACACAGATGGGGAGCGTAAGAATACAACCACCGACTTCTTCATCGACACATCTTATCCACAACCTTCTC CGACATCCCGAACCACCGTCTTCCTTCTGTCTCTTCATCAGACCCTTTCGCTTCTCCGCTGTAACATGTCAATCCAGCCGCTGTAA CAAGCCTCGGTTTCAATCAATCTCTTCAAAGCCTCCGCTTCCTTTTCACTCTACTTCTTCTTCTTCTTCACTCGTAGCGAAATCCT TCTCTGCCATCGATGAGCCGGACCTCCTCGGAGAAGAAGATGAGAGCGAGGAAGACGATTACAACGAAGAAGAAGACGAAGAAGAA GAGCTGGACAGTGGAATGGTATCCGCGAGAGGAAGTGAGGAGGACTACGAGGAAGGTTTAGGAGACAAGGAGGAGGATAAGATAGA GAAGATGAAGAAGAAGGCTCGGGGCTCGGGTTTGAAGTTGACGATAAAGGAGAAGAAGGAACTTGCTTCATACGCCCATAGTCTTG GTGACAAATTAAAATGTCAACTCGTCGGGAAATCTGGCGTTACTGATTCAGTCGTTTTCTCCTTCCTGGAGACTCTCGAGAAGAAC GAGCTCTTAAAGGTGAAGATACGGAAGACATCTCCAGAGGAGATGGAGGACGCTGTTATGCATTTGGAGGAAGCCACTGGTTCTGT TGCTGTTGGCCAAATCGGGAGGACGGTTATATTGTACCGCCCTAGTCCCCCCAAAATGAAAGCTGAGGAGAAGAAGAAAGAAGTTG AGAGATTGTTGATTAGAAGGAGACAGAAGTTTTCAAACTCCCGACCCCCGAGACCTTTTAGGAGAGAGTATTCAGAGAGACCTGAT GGACGTGGACGCAGAGGAGGAAGTAGAGTTGCAACCCCTTGATTTTTTTGTTATTGTTAATTTGCTCGGTTTGTTTTTTTTATTAT CCCCTAAGTAGACCAGTTTTTTGCTTTTGTATGCATTTTTCAAAAAAATACAATCTCGTTGATCTGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_195615 putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana]	1019	2e-108
XP_002868881 hypothetical protein ARALYDRAFT_490673 [Arabidopsis lyrata subsp. lyrata]	994	1e-105
NP_849521 putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana]	919	7e-097
XP_002265886 PREDICTED: hypothetical protein [Vitis vinifera]	478	9e-046
NP_179731 RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]	429	4e-040

Swiss-Prot top hits (Blast detail)	Score	e value
P0AGK6 RNA-binding protein yhbY	123	6e-006
P0AGK5 RNA-binding protein yhbY	123	6e-006
P0AGK4 RNA-binding protein yhbY	123	6e-006
P0AGK7 RNA-binding protein yhbY	123	6e-006

TrEMBL top hits (Blast detail)	Score	e value
Q9SVI9 At4g39040	1019	1e-108
Q3E9N8 Putative uncharacterized protein At4g39040.2	919	5e-097
C6TB79 Putative uncharacterized protein	419	4e-039
Q9SJU2 Putative uncharacterized protein At2g21350	410	5e-038
A5APQ9 Putative uncharacterized protein	392	6e-036

Arabidopsis top hits (Blast detail)	Score	e value
AT4G39040.1 RNA binding	1019	7e-111
AT4G39040.2 RNA binding	919	3e-099
AT2G21350.1 RNA binding	429	2e-042

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	5			100%

Unigene Members	Member information