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Information for unigene UN23211
| FASTA Sequence |
| Unigene ID: UN23211 | Length: 1327 |
| SNP | GGGAAGCCGGATCCGTGCCCGCCGCTAAAGAGCTAACCACTTCGAGGTACAGTCTCCACTGCCAAAGAAGGGTTCTAGGGTTTCGC
AGCTCCTTCTTCCTCTTCTTCGCAATCCCAAAGATGAAGCTCGTCAGGTTTTTGATGAAGTTGAACAACGAAACTGTGTCGATCGA
GCTGAAGAACGGGACTGTGGTCCATGGAACCATCACTGGTGTTGATGTGAGCATGAACACTCACTTGAAGACTGTTAAAATGACTC
TCAAGGGCAAGAACCCTGTGACGATGGACCATCTGAGCTTGAGGGGTAACAACATCCGCTACTACATTCTTCCTGATAGCTTGAAC
CTCGAGACTTTGCTTGTTGAAGACACTCCTCGACTTAAACCTAAGAAGCCTGTTGCTGGGAAGCCTGTTGGAAGAGGTCGTGGACG
TGGTGGTCGTGGGCGTGGTGGTGCTGGTCGTGGCAGAGGTCGTTAAAAGCAGCGACAAGTTTAAGGTGTGTGAGTTGAATTGAATC
TGTAGGAAGAAGAACCCTTTGGTGGTGTCTCAGTTATGTATTTAGAAACTCTTGCAGAGGAAGTTAATGTGTAATGCAACTCTATG
GATTTAAAGGATTAAGCTTTTCATGTTATAAGAGCATGTACTAAAGCCTTTTAATTCATTTGAAAAATCTGACTATAAAAATGCGT
TAACATGTTGAAACACTTAGTATAGAGAAAAAGAAACTGTTCTCTCTTCCGGTAGTCTTCTTACAGGATCCTGCAATTAGGTTCGT
GGTTGTAGACTGGTTCCCCGATATAGTCCCTAGAATTATACCCGTAGGGATCACATGGGTGATGATAGGATGATGGCGCACCATAT
CCATAAGGCCATGGTTGTGGATGACATGGTTGATGACAATGACATGGCTCTTGTTCCTCAGGCTTTTTCTCATCTGTTTTTTTCTC
TTCGGGCTTTGCCTCTTCTGGTTTTTTCTCCTCGGGTTTCTTCTCATCTGGTTTCTTCTCATCTGGCTTCTTGTCTCCATCGGGCT
TGGGTGGTTCGACTTTGTTTACGCTTACAAGCTCCGCACAGGCTACCTTCCTCCTCAGCGTGTTGGTTAGACCGATCATATCGACT
TCAAAACCGGTTACCTCAATCTGGTTCCTGTGATCTCCCTTTATTTCCACAGCCGACACACCTTTAAACTTAACCGCAGTTTTCAT
TGCTTTTGCTCGGGTTTTGTCATCAGTCATTGTAACTCTTATCAAGATCTTTTGCTTCATGTTATTATCTTCTTCACGACTGGTAT
GGATGATTAGAGATGATCAACTCGAGAACTCGCTTTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABC00745 putative small nuclear ribonucleoprotein D1 [Brassica napus] | 610 | 7e-061 |
| CBI32365 unnamed protein product [Vitis vinifera] | 540 | 9e-053 |
| NP_187416 small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] | 537 | 2e-052 |
| ACU24327 unknown [Glycine max] | 537 | 2e-052 |
| ACU19289 unknown [Glycine max] | 532 | 8e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9VU02 Probable small nuclear ribonucleoprotein Sm D1 | 439 | 2e-042 |
| O42661 Probable small nuclear ribonucleoprotein Sm D1 | 414 | 2e-039 |
| Q3ZC10 Small nuclear ribonucleoprotein Sm D1 | 410 | 5e-039 |
| P62314 Small nuclear ribonucleoprotein Sm D1 | 410 | 5e-039 |
| Q4R5F6 Small nuclear ribonucleoprotein Sm D1 | 410 | 5e-039 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2PWT6 Putative small nuclear ribonucleoprotein D1 | 610 | 5e-061 |
| C6TN35 Putative uncharacterized protein | 537 | 1e-052 |
| Q9SSF1 AT3g07590/MLP3_4 | 537 | 1e-052 |
| C6TBT7 Putative uncharacterized protein | 532 | 5e-052 |
| D5ACM1 Putative uncharacterized protein | 529 | 1e-051 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07600.1 heavy-metal-associated domain-containing protein | 587 | 1e-060 |
| AT3G07590.1 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative | 540 | 3e-055 |
| AT4G02840.1 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative | 527 | 1e-053 |
| AT5G48290.1 heavy-metal-associated domain-containing protein | 387 | 2e-037 |
| AT5G48290.2 heavy-metal-associated domain-containing protein | 341 | 4e-032 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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