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Information for unigene UN23214
| FASTA Sequence |
| Unigene ID: UN23214 | Length: 1136 |
| SNP | GGACGGAGAATCCAACAGATTCAGCGACCTTCCTTCCACTCTCTCCGGCGAGATCTAATTTCCGATCCTTCACGGTGGCGTCAACG
TCAGGGCAACAACAACAAGGTCTCTCAAGAAGGAAGCCTCCACCATCATCATCTCCATCATCTCCTCCTTCCTCTGATTCGCCTCT
ACTACGAACTCCCTCGGCGAGGAAAGCGAGCCCCGAGTTTCCCTTTTATCAGCAGAACTGGTTCATCGCTCTCCTCTTCCTGATGG
CTATGGGATTCTTCTGCCTCGCTCTCTTCCTTTACCTCAGCCTTGATCCCGATTCCGGCTACACCTCTGCCTCCGCCGCAGCGCCT
TCCGGTAAAGAAGGTGTCCAGGTAAGTTATGGGAGTGCGATAAAGCTGATGCACGAGAAGACGAAGTTTCGTCTGCATTCTCACGA
TGTGCCTTATGGATCCGGCAGTGGTCAGCAGTCTGTTACTGGCTTCCCTGGCGTCACTGATTCCAACAGCTACTGGATTGTAAAAC
CTGTGCCTGGGACAAAAGCCAAGCAAGGTGATGCCATCAAGAATGGAGAAACCGTTAGATTGCAGCACATGAAGACCAGAAAATGG
CTCCACAGTCACCTACATGCATCCCCTATCTCTGGAAACTTAGAGGTTAGCTGCTTTGGAGATGATTCAAATTCCGATACTGGGGA
TCACTGGAAGCTTACAATCGAAGGTAGTGGAAAGATATGGAAACAAGACCAAAGAGTCCGTCTTCAACACATTGACACTAGTGGCT
ACCTCCATAGCCACGACAAGAAGTACCAACGCATTGCCGGTGGTCAGCAAGAGGTCTGTGGAATCCGGGAGAAGCGGGCTGATAAT
GTTTGGTTGGCAGCAGAGGGAGTCTACCTTCCCGTTAATGAGAGTAGCAAGTAAGGTAAAGAGTTGTGTTAACTTCTCTCGAGGAC
TTTGAATCTCATCTTTTACTCTCTAAACTCGAAAACAAGAAAATAGAAAATATATGTATTTTGCTAATCTGCGATTGATGATGATA
CTGTAGTCACGCGAATTTACATATTGTTTTGCTAGGTATTTTGCATTAATCTTCTTTTTTTTCTTCCTTATTTAAGAGTTTAATTA
TTATGCGTTTGTGATTGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565585 stromal cell-derived factor 2-like protein [Arabidopsis thaliana] | 1087 | 3e-116 |
| XP_002878825 MIR domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 1078 | 3e-115 |
| AAM65625 unknown [Arabidopsis thaliana] | 1074 | 9e-115 |
| 3MAL Chain A, Crystal Structure Of The Sdf2-Like Protein From Arabidopsis | 974 | 3e-103 |
| XP_002515438 Stromal cell-derived factor 2 precursor, putative [Ricinus communis] | 947 | 5e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93ZE8 Stromal cell-derived factor 2-like protein | 1092 | 3e-118 |
| Q54P23 Stromal cell-derived factor 2-like protein | 441 | 9e-043 |
| Q99470 Stromal cell-derived factor 2 | 391 | 6e-037 |
| Q9DCT5 Stromal cell-derived factor 2 | 390 | 8e-037 |
| Q3SZ45 Stromal cell-derived factor 2 | 388 | 1e-036 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RNW9 Stromal cell-derived factor 2, putative | 947 | 3e-100 |
| C6TNG6 Putative uncharacterized protein | 941 | 2e-099 |
| C6TJ58 Putative uncharacterized protein | 933 | 1e-098 |
| A9PAE2 Putative uncharacterized protein | 905 | 2e-095 |
| A9PIH6 Predicted protein | 901 | 7e-095 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G25110.1 SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR) | 1093 | 2e-119 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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