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Information for unigene UN23288
| FASTA Sequence |
| Unigene ID: UN23288 | Length: 1401 |
| SNP | AGTTCAGATTAAGCTCAGATTAGGCCATTAGAAAAAAGGTGTAGCCAAAGTACCAAAATACCAAGGCAAGAGCCTTGTTTCTTCAA
AGGCGAATTTTGCAAAGCTCGAAGTAGAAGTTTAAGAACAATGACTACGATGAAAAGAGTTATTTGGGAAGAGTTATGGCAATACA
CAAAGAGTTCTCTTCCCTCTACTACGATCTTAAAAAGAAAAAAAAGACTTGTGAAGAAATTTTTTTTTAAAAAGCGGAGTCATGAT
GGGTTGTTGGTTTTGGTACAGTCTGTGTTGTTCAACTTGTAACTACACGGTGTAGTGATGTCCTGCTGTATCAATGTCCAAGCCCT
TAAGCTTTGCAACTGATTCAACATGTCCTTTCAGTGTGTGAAGCTCCCTAAGCCTAGCTATCTCGGCCCTTCTCTTGGCTTGCTCG
GCAATCTCAGACAGCTCTCTGTAACCTCCTTTCTCTGGGAAGATATTGACCTCTTCTTTTGGCTGGAGACCGTGCAGTGTCCTCTG
AGCTTGTGCCCATTGAGCTTCTCTTTCTCCAATACCGTAATCTTTCTTGGTCGTGAAAGCAGTCCTGTTGTCAAACATGCTGGTCC
AAGCCTTTCCACTCAAGATGTATCGAATGGCAAACTTCAAAAGGTCTTGTGGGAAGTATGTTACAATACTGTAAATCCAAATAACA
CCAGCCCATCCCCAACCGATACCCTTCACCTTTGCAAATGTCCAGTCCGCATACACTGCAATCAAAGTCGCAACAAGTTGTGCAAT
AACGAATGCAATCATCAGAAGCGCCCCAGGACGTTCAACGAAAGACCAGCTCCTTGACCTCGTGACGAAGATAAGCGCTTGACTGA
TGATACTAACTTGTAGGTATACAGCACCCATTAGCTCATCGTTGTTGTTCCTGATTGACCTCACACCAAACTTGTCCGTGAAAAAG
TCAGTCTTATGAATCGCCCAGAAGAAAATCACACTCATAACAGCTTGGTAGCCTCCCAACACAATTCCAGTGGCGAAAATTTCTTT
GAGCTTCCAGCTATCAGGTGTTGGAGATGGCTTAACTCTGTCCTTTGAGATTGTCATGATAGTACCGTCATTAAGGATGGCAATAA
TCAGGACCATGAAAGCTGAGAAGTCAAATTCCCATATAAGAGCAATAAGCATGAAACCAAACACAATACGGATTGTGATTGAGACT
GCATAAATGGTATAGTTCTTCATTCTCTGGAAGATAGCTCTACTAGTGAGCACTGCATTGATGATAACACTCAATCCAGGTTCAGT
GAGAACGATATCCGAAGCACCACGAGCAGCATCTATAGCATCGGCCACAGCAATACCAATGTCAGCTTTCTTCAAAGCAGGAGCAT
CGTTGACACCATCACCAGTCATTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002886251 hypothetical protein ARALYDRAFT_480836 [Arabidopsis lyrata subsp. lyrata] | 1826 | 7e-202 |
| NP_179486 H(+)-ATPase 1 [Arabidopsis thaliana] | 1825 | 1e-201 |
| AAA32813 plasma membrane proton pump H+ ATPase [Arabidopsis thaliana] | 1816 | 1e-200 |
| BAJ33915 unnamed protein product [Thellungiella halophila] | 1812 | 3e-200 |
| BAJ34124 unnamed protein product [Thellungiella halophila] | 1703 | 1e-187 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P20649 ATPase 1, plasma membrane-type | 1825 | 4e-203 |
| P19456 ATPase 2, plasma membrane-type | 1692 | 1e-187 |
| Q03194 Plasma membrane ATPase 4 | 1618 | 4e-179 |
| P20431 ATPase 3, plasma membrane-type | 1567 | 3e-173 |
| Q7XPY2 Plasma membrane ATPase | 1540 | 5e-170 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q96578 Plasma membrane H+-ATPase | 1635 | 7e-180 |
| Q43178 H(+)-transporting ATPase | 1633 | 1e-179 |
| B9ILW8 Autoinhibited H+ ATPase | 1621 | 3e-178 |
| B9N321 Autoinhibited H+ ATPase | 1617 | 9e-178 |
| C0Z2R2 AT4G30190 protein | 1611 | 4e-177 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G18960.1 AHA1 (ARABIDOPSIS H+ ATPASE 1); ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism / protein binding | 1826 | 3e-204 |
| AT4G30190.1 AHA2; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism | 1694 | 6e-189 |
| AT5G57350.1 AHA3; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism | 1569 | 2e-174 |
| AT2G07560.1 AHA6 (Arabidopsis H(+)-ATPase 6); ATPase | 1514 | 4e-168 |
| AT2G24520.1 AHA5 (Arabidopsis H(+)-ATPase 5); ATPase | 1509 | 2e-167 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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