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Information for unigene UN23344
| FASTA Sequence |
| Unigene ID: UN23344 | Length: 999 |
| SNP | GTTTCAATGAAACATCAGGAATATGGTATTACAAATAGTAAAATCACATAGAATTCAAGCTCACACGAAGCAGTCGATCACCAAGA
CAAAACATCATAGGTTTCACAATCTGTCTTTTCATTACAGAGAGTTTTGATACACATGCAGCTCATAGGACACATTACTACCATTT
TTTTTACAAGTCACTAGTTCAGAGGGATAACAATATCGCCAATGTTTTTGTGCCATGGATCCGCCAAGTGAGTAGCCAAGTTCTCC
AATGGTCCTGTCCCTGGGTAAGCCGATTGCTGCACACAGAAGCCTACAAAGGCCAACAACGCAAGCCTCCCGTTCTTGATCTCCTT
AACTTTCAACTCCTCAAACTTCTTGGGGTCTTTGGAGTATCCAAGAGGGTCAAATGCACCTCCCGGGTACTTCTTTTTCTCAGGGT
CTTTCTCCATGCTCCTCTGGTGCTCAACAAAGGCAATAGCTAAGAACTCTATAGCCAAGATTGTTGGCAGAGTACCCCATGGGACC
GGGTTGCCCAAGTAAGTGGCTTGTCCTCCAGGTACTGCTGCCCATTCTTGAGCCTTGACCCAGTTTCCGTATCCCAAAGCCTCTGG
TACCAAAATCCCTGGAACAGCGAGCATAGCCCATCTACAGTGGATGAGCTCTGATTCTTTGTACCTCTCAAGGTTCTCTGGAACCT
CTCCAAGTCCAAGAGGGTCAAACCCAAAGTCACCAGGAGCAGAACCGTCGAGGTAAGCGGGACGTGGCTCGCCGGGCATCCAGTGA
GCAGCCATTCTGATACGGCCAACGTTCCCGGCATTGGGGAGGGCAAATCCGGAGGAGACGAATTTAGACTTTGAAGAAGAAAGAAG
AGAAGGGTAGACGGCGGCGATGCCGCAGCTCATGAGCGAGTTCGACGCCATTGTATTCTCCGATCTCTCTCTCCCTCTCTCTCCCT
TTCTGTTTGCTACAAAGAAGAAAGATGTGAACGAGAGGTGTGTGTTGGATGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ33962 unnamed protein product [Thellungiella halophila] | 1273 | 6e-138 |
| XP_002878004 hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp. lyrata] | 1261 | 1e-136 |
| NP_191049 light-harvesting complex I chlorophyll a/b binding protein 1 [Arabidopsis thaliana] | 1252 | 2e-135 |
| AAG40043 AT3g54890 [Arabidopsis thaliana] | 1242 | 2e-134 |
| XP_002312019 light-harvesting complex I protein Lhca1 [Populus trichocarpa] | 1117 | 7e-120 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P12360 Chlorophyll a-b binding protein 6A, chloroplastic | 1079 | 8e-117 |
| Q9SDM1 Chlorophyll a-b binding protein 1B-21, chloroplastic | 990 | 2e-106 |
| Q9XF89 Chlorophyll a-b binding protein CP26, chloroplastic | 379 | 1e-035 |
| Q36718 Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) | 353 | 1e-032 |
| P22686 Chlorophyll a-b binding protein of LHCII type I, chloroplastic | 347 | 6e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q01667 AT3g54890 | 1252 | 1e-135 |
| Q9C5R7 AT3g54890 | 1242 | 2e-134 |
| B9HLM2 Light-harvesting complex I protein Lhca1 | 1117 | 5e-120 |
| Q40512 Photosystem I light-harvesting chlorophyll a/b-binding protein | 1107 | 7e-119 |
| B9T4T2 Chlorophyll A/B binding protein, putative | 1102 | 3e-118 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G54890.1 LHCA1; chlorophyll binding | 1253 | 5e-138 |
| AT3G54890.4 LHCA1; chlorophyll binding | 1015 | 2e-110 |
| AT3G54890.2 LHCA1; chlorophyll binding | 782 | 2e-083 |
| AT3G54890.3 LHCA1; chlorophyll binding | 768 | 8e-082 |
| AT4G10340.1 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding | 379 | 1e-036 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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