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Information for unigene UN23363
| FASTA Sequence |
| Unigene ID: UN23363 | Length: 1449 |
| SNP | AAGGGATAAACCAACTTTTATTTCATTATTGTGGGCTATTCGCCAAACAGAGCTACACTCAACATGCACTAATTGAAAAATTCGCA
GTTACAATATCAGACAGTCTAAAAATCCCGAACACCCTCTAGGACTCATCAGTTGGTAGGTGGTAACAGAGTGGTCTTATCAAGAG
AAAGAGACTTTGAAGTCCGTCTTAGGTCAAGCCAACGAGCTTCTCACTTATCTCCCAAACTTTACGAGCCTTCTCAACGTCACTCG
CTTCTTCTGACAACTGGTTCTCAAAAGAAGCCGAAGCCTTGTTCCAGCTCCAGTACACTCCTGATTTCGTCAAGCTCGGATCACTC
ACCACCTGAGCAAGTCTTTTGCCAGACTCTGTCTCGGAGACGTATCCTTTGGTGATGTACTTCTGAAACGGAGGGAATAGTGTTCG
GAAAAGCGGGATGTGCTCTCTGAATAAACCTGTGGAGGCGATGCAACCAGGGTAAAGCGAAGCGAATGTGATTCCTGTTTCTTCAT
GGTAACGCCTGTGAAACTCTTGCATCGTCAACATGTTGCACACTTTGCTGTCTTTGTAAGCCTTTGCACCGTCGAAATCTCCTCCA
TCGATCATCGCCGAGCTGTTCAAACCGTTCAAGCCTCCCGCTAAGCCTCTCAAGTCGCCTAGGTTAGCTTTAGGTGGTACGTTACC
AGCCAATGTATTCGTGTTCCCTGTAATGGATCCGACAATGATGAGACGCTTTGAAGGGTAATCAGACTTCTTCAAGTCATCAAGCA
ACAGCCTCGAGAGAAGAAAATGTCCCAAGTGATTGGTCGCAACGCTAAGCTCAAACCCTTCTGCGCTGTAGGTAGGTTCTTTAGCT
GTCGGGAAATAGACAGCAGCGTTGCAGACCAAAACATCGAGAGGCATCTCCGATCTCCTGAAGCTATCAACGAACTGTCTCACGCT
GTCTAACGAAGCCAAGTCTAGATGCATCACCGTGTAGCTGTCTTTAGGCATCCCTGCGGATTTGGCCGCTCTCTCGGCTTTGAGGA
AGTCCCTGCACGCCATTATCACGTGCCATTTCCCTGTCTCGGCGAGGGCTTTGGCCGTGGCTAGACCTAACCCTGACGAAGCTCCC
GTGACCACCACGTTGCCTTTCCTCAAGGTCTTCTTGCCGTCAACTGGAGATTTTGTGATGGAGGGGCTCGAAGTTGCGGCAGTTTG
TGCTCTAATCGCTACGTTCCTCGAGCTATGTTCTCTCTTGAATCATAATGAGGAAGAGCCATGTTCGTTAACAGAGGCACCAAAGA
GAGTCGAGTCCTTGAAGGATGATGAAGAAGCATTCAGTTTTACATCTTTTCGGACAGAGAAAGCAGAGGAGACCAAAGAAGCGGCT
TGAAGGGCCATTTTTGGACAAAACAGAGAGTGAGAGATAGCAATAGCAATGAAGAAGAAGACTACTGAAGTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002869563 hypothetical protein ARALYDRAFT_492051 [Arabidopsis lyrata subsp. lyrata] | 1910 | 1e-211 |
| NP_194474 protochlorophyllide reductase B [Arabidopsis thaliana] | 1889 | 4e-209 |
| ACJ12925 protochlorophyllide oxidoreductase B [Chorispora bungeana] | 1876 | 1e-207 |
| AAM65116 protochlorophyllide reductase precursor [Arabidopsis thaliana] | 1872 | 4e-207 |
| XP_002866028 hypothetical protein ARALYDRAFT_495501 [Arabidopsis lyrata subsp. lyrata] | 1779 | 2e-196 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P21218 Protochlorophyllide reductase B, chloroplastic | 1889 | 2e-210 |
| Q42536 Protochlorophyllide reductase A, chloroplastic | 1763 | 7e-196 |
| Q9SDT1 Protochlorophyllide reductase, chloroplastic | 1664 | 2e-184 |
| Q01289 Protochlorophyllide reductase, chloroplastic | 1657 | 1e-183 |
| Q41249 Protochlorophyllide reductase, chloroplastic | 1647 | 2e-182 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DG36 AT4G27440 protein | 1889 | 3e-209 |
| B6VGD9 Protochlorophyllide oxidoreductase B | 1876 | 8e-208 |
| Q8LAV9 Protochlorophyllide reductase | 1872 | 2e-207 |
| B9T7M6 Short-chain dehydrogenase, putative | 1677 | 1e-184 |
| B9N1K1 Predicted protein | 1647 | 3e-181 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G27440.1 PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase | 1890 | 1e-211 |
| AT4G27440.2 PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase | 1890 | 1e-211 |
| AT5G54190.1 PORA; oxidoreductase/ protochlorophyllide reductase | 1764 | 4e-197 |
| AT1G03630.2 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase | 1528 | 1e-169 |
| AT1G03630.1 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase | 1520 | 9e-169 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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