RadishBase

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Information for unigene UN23377

FASTA Sequence

Unigene ID: UN23377	Length: 692		SNP
GGACTCTCAAAACGCGACGACGAAGAACAAATGCAAATCATCTCGTCAAAGTAGAGATCCGGATCATCATCTCTATCCTCCCGAAG ACGGAATAATCCAACTCCGGTATGGCGGCGAGGAGAAACGTACGGTACGCTCAGCTTCCAGGAGACGAAGACGATGAGGATTACGG AAACGGTGGCGGGAGGAGGAGAGATTACGATCCTCGCTTCGATTATACACCGAAAGCGTTTGATAGAGTTCCGTGGAAATCGATAG CGTTAGCTTTGTTTCTTCTGTTTCTTGGTTGCTTGCTTCTTCTTTTGGCGGTTTTTATTTTCACTGGTCACATGGAAGGAGATAGC TCTCAGGGTTACGCGCTTCTTGTTCTTGGCATCCTTACTTTCCTCCCTGGGTTCTATGAGACTCGGATTGCTTACTATTCGTGGAG AGGAGCTGAAGGGTATCGTTTCGCAGCCATTCCTTCCTACTGAATTCAAATTAGCTGGAGATGGTTACACGACTCTATCTGTGCAT AAACTTATTGGAGAAATGTAATAATAGACTTGAGGTGTTTCATGAATCACTCACTCCAAAAGGCTAGGATTATAGATAGAGATACT ACTTTAGACTGTTATGTTTTATTGATCTAGCTTGTGAATCTTATTGAACCTCGATTTTTATCAAAATGTCGTACGCGTCTTTTTGT CGGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_566844 uncharacterized protein [Arabidopsis thaliana]	593	2e-059
XP_002877160 hypothetical protein ARALYDRAFT_905208 [Arabidopsis lyrata subsp. lyrata]	589	6e-059
XP_002308035 predicted protein [Populus trichocarpa]	433	8e-041
ABK94415 unknown [Populus trichocarpa]	432	1e-040
ACU13132 unknown [Glycine max]	423	1e-039

Swiss-Prot top hits (Blast detail)	Score	e value
Q96A57 UPF0414 transmembrane protein C20orf30	179	1e-012
Q5ZLH4 UPF0414 transmembrane protein C20orf30 homolog	178	1e-012
Q5R8X3 UPF0414 transmembrane protein C20orf30 homolog	177	2e-012
Q5E975 UPF0414 transmembrane protein C20orf30 homolog	175	3e-012
Q8CIB6 UPF0414 transmembrane protein C20orf30 homolog	175	3e-012

TrEMBL top hits (Blast detail)	Score	e value
Q9LVP2 At3g29170	593	1e-059
B9H9W7 Predicted protein	433	5e-041
A9PDG2 Putative uncharacterized protein	432	7e-041
C6SV59 Putative uncharacterized protein	423	8e-040
C5WVP5 Putative uncharacterized protein Sb01g032100	406	7e-038

Arabidopsis top hits (Blast detail)	Score	e value
AT3G29170.1 unknown protein	594	7e-062
AT2G19350.1 unknown protein	178	1e-013
AT4G29850.1 unknown protein	172	6e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	3			20%


11	4			27%


12	5			33%


6	3			20%

Unigene Members	Member information