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Information for unigene UN23397

FASTA Sequence
Unigene ID: UN23397Length: 1193  SNP
GGGAAAATCTCTGTTATATATCAGAAGTAGTAGCTTCCTCACTAGGGGAGAACACAACCACTCAGAATCACAATGAAGTTCCTTCT
TCATCTCTCTGTCTTGTTGTCCATACTCTTCATCTCTCTCCCATCTTCTCACAGCTCCTCCTCAAATGACAAGATTGCCCTCCTCG
AAATCAAGAAAGCCTTAAACAACCCTCCACTCCTCTCCTCCTGGAACCCCCAAACCGACTCCTGCACCACCTGGACCGGCGTAGAG
TGCACCAACGGCCGTGTCACCGCCCTCACCATATCCTCCGGCGAAATATCCGGCCAGATCCCGGTTCAGATCGGCGACCTCCTTGA
GCTCCGTACGCTTGACTTCAGTTACTTGACTCATCTCACTGGAAACATTCCACACACCATCACCAAACTCAAGTACCTGGACCTCC
TCCGGTTAAAGGAGACCAATCTCTCCGGTCCAATCCCTGATTTCATCAGCGAGCTCAAGAGTGTTACGTTCTTAGACCTTTCCTTT
AACCAGTTTACCGGTCCAATTCCCGGGTCGCTTTCTCAGATGCCTAAGCTAGGAGCCCTTCAGATCAACAACAATAAGTTAACCGG
TTCAATACCAGACTCTTTCGGTTCTTTTGTAGGCACAGTTCCTAATCTCTACCTGTATAACAATAAGCTCTCAGGAAAAGTACCAG
AATCGTTGTCAAAGTACGACTTTAACGCAGTGGATCTGTCGGGAAACGGTTTCACAGGAGATGGTTCGATGTTTTTCGGACGTAAC
AAAACAACAATACGTGTGAATCTATGCAGGAACATGTTTGAGTTCGATCTCTCCAAGGTTAAGTTTGCTAGGAGCATAGTGTCGTT
GGATCTGAGCCACAACAAAATCTTCGGGAAGTTTCCTAGGGAGCTGAGTAAGCTGCGTCTCGAGCATTTCGACGTTAGTTACAATC
ATCTATGCGGAAAAATCCCACGTGGTGGTCTCCTTCAGACATTTGAACCATCTGCTTTCTCTCACAACCTCTGTCTTTGTGGGACC
CCACTTAAGGCTTGTTGATTTGGTTTAGTGGCGTGAGAAGAAATAAGTAGTATGTCTTTATCTGTATGATGATGATGTGTTAATTA
TCAGGCCGCCTATCAAGTGAATTGTTCTATTTAATAAAATTAATGTTAAGAGTTTGGTAAGAATGTTGTTGAGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ACX42230 polygalacturonase inhibitory protein [Brassica rapa subsp. campestris]15676e-172
XP_002884889 leucine-rich repeat protein FLR1 [Arabidopsis lyrata subsp. lyrata]13921e-151
NP_974291 polygalacturonase inhibitory protein-like protein [Arabidopsis thaliana]13696e-149
AAL15279 At3g12148/T23B7.11 [Arabidopsis thaliana]13633e-148
AAF65195 leucine-rich repeat protein FLR1 [Arabidopsis thaliana]13472e-146

Swiss-Prot top hits (Blast detail)Scoree value
A7PW81 Polygalacturonase inhibitor8891e-094
Q9M5J9 Polygalacturonase inhibitor 18836e-094
Q05091 Polygalacturonase inhibitor8461e-089
Q9M5J8 Polygalacturonase inhibitor 28343e-088
P58822 Polygalacturonase inhibitor 26514e-067

TrEMBL top hits (Blast detail)Scoree value
D0EWF2 Polygalacturonase inhibitory protein15674e-172
Q9LH52 Leucine-rich repeat protein FLR113694e-149
Q93ZC1 At3g12148/T23B7.1113632e-148
Q9M7E7 Leucine-rich repeat protein FLR113471e-146
A9CSN3 Polygalacturonase inhibiting protein8882e-093

Arabidopsis top hits (Blast detail)Scoree value
AT3G12145.1 FLR1; enzyme inhibitor/ transcription factor binding13702e-151
AT5G06860.1 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding8835e-095
AT5G06870.1 PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding8342e-089
AT5G49770.1 leucine-rich repeat transmembrane protein kinase, putative3423e-032
AT1G35710.1 leucine-rich repeat transmembrane protein kinase, putative3012e-027

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
714  44%
 
125  16%
 
116  19%
 
67  22%

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