Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN23421

FASTA Sequence
Unigene ID: UN23421Length: 1867 SSRSNP
GGGAATCGAAGCTGGGCTACTTGCGGAGCGAATTAGCGACTGCGATCGCCGTTCGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
GGAAGAGGCCATGGGAATCTCCGGAGCTCGCTCAAGCACTGTTTGTATTCTTCTGTTGCTCTCGCTGAGCTTATTATTTTCCTGTG
CTTTCTCTAAATCTCCTCGTCCTATATCCGATGCGGAGATCAGGGAGAAGAAGAACCAATGCTATGCTGATATTGAGAGTGGGCTA
TGGGGTTGGCAATTCAAAGCTTCTTCCATAGCAAAAGAGAATTGTGCGCTGCGATGTCTTTCTCCGGTTTGTTATGAGCTCATATA
TGAGAGTGATCCCCTTGAAGAAGGTGAAAAAGATTTGATTCGGAGCCAAGAATACAAATATTGTATGTACAAGTCTTCGCTCGGGG
AGAGCTTAGATGGTGTTCGAGGCAGCTTTTTATAGAAACCAAAGCCAACAATACTCTCTTTAATTGTGTAGCATTCTGCTCTTCCA
TGTTTGTAAGACTTCGATTTTGTTTCAAACGCTCATCATGTGAAAATAAAATTGCTGTTCTGCATAAATTTGTGATTTTGTAGCTT
GTATTATCCACAGTTGTGTAGCTTTACACAAACGTGGCAACACACGAGCATTAGAAGCGATGAAGAACTTCACTTTTAGATTGATT
CGATTTGTTTTAAAACAAACTTGGCAACACACAAGAATAAAATAGTTGAAGACTATTGTGATCACTCCTAAAGAGATTTCTAAGAA
TTAAACAGAAATTATGTTCAAGTAATCATCCGTCACAGTTTTTACAGACGCTCCCCTTGCTCACGAGCAATAGAAGCAGAGAGGAT
TCCAAGGTCTCGATTAAAAACAGTTAACGCGGCTTCACACTCGGACACAATTCTAGTCACAGAAGACGGCTCTCCAGCTACTGTTC
CAGATGATCCAATCGACAGTGCTGCATGTGAGTCTCTTAGGTTCTTCAAGTTCCCTAGGAACTTGAGAAGCATATTATATGCCTCC
AGTAAACGGTTTGCAGCAGGACCAAACCCATGAAGCTGAGGTACTTCCATCATGTGAGTCCATGGTCGGATTTCCTTTGTGTAGAT
TGTGTTGAACGCTCTAGCTGTTTCAAGAAATGATTCTAAACGAGCCCTTAGTTCAGATTCCACTTCTGCATATTCTTCGTCGGGGT
TATAGGCATGCTTTGCTGCTAAATCATCAACTTTTTGCTGAAGATTAGAGAGAATCTTGGCCTGTTCTGAAAGTTTAGTCTCCAGT
TCTGAAACATCTGGTAAAGGATATATGGACTGGATCTGCACATCAGCAGGGAAGAGTTTGCATTCCTCAGAAAATATAAGAGACTG
TCTCTCAGCAATAGCATCTATAAGCTGAATGTCTTTGGCAACCTGCTCATCAATACTCCATTCGGGATTATCAGAGAAGAGGCTTG
CCTCCACTAAATCAACAATATTGCGAAGCATTTCCATTCGATCTTCATAGGTTCCATGTCCTTGAATGGCTTCAATGTCTACAGTT
GGTGTGAACCCAAGAAACTTTGCAATCTCTGCCAAATACTGAATGCGAACAGTTTCTTCATCACGAACTCCAGCATCTCCCTGAAG
ATTTTGCTGAGAGAAAGGAGACTTATCACCTAACAACTTGAAGAAGAGCCATTCGAGAAGAGCATAACGTTCCATCCCGGCGAAGA
GGAGAGACTGAGCAGGAGCATTTGCCCTTGGGTAACTCAGCACCGCTAGCTTCTTCTGTATCTCTTCCATCTGCTTCGCCGCCATT
TTGCTCCTTCCCGGCGAGACGGCTTCAACACCGATCCAATCTCTCGAGATCTCCTCCTCTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAM64307 nuclear matrix protein 1 [Arabidopsis thaliana]16162e-177
NP_568354 uncharacterized protein [Arabidopsis thaliana]16153e-177
XP_002873839 nuclear matrix protein 1 [Arabidopsis lyrata subsp. lyrata]16092e-176
XP_002523988 conserved hypothetical protein [Ricinus communis]14487e-158
XP_002264476 PREDICTED: hypothetical protein [Vitis vinifera]14398e-157

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8LD35 Nuclear matrix protein 116162e-177
Q0WTP1 At5g1762016152e-177
B9SDB9 Putative uncharacterized protein14485e-158
A9PBH5 Predicted protein14298e-156
Q93XE2 Nuclear matrix protein 114101e-153

Arabidopsis top hits (Blast detail)Scoree value
AT5G17620.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 62 Blast hits to 62 proteins in 32 species: Archae - 0; Bacteria - 19; Metazoa - 8; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).16169e-180
AT5G17610.1 unknown protein5191e-052

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  14%
 
1211  50%
 
84  18%
 
92  9%
 
62  9%

Unigene MembersMember information