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Information for unigene UN23435

FASTA Sequence
Unigene ID: UN23435Length: 1030  SNP
ACCGCTTTTCACCTCCAGCTGCTAATAAACCCTAACTCACTCAACCTTTTCTTCCTCGATTGTCAGCTATGGAGTTCTGGGGAGTC
GAAGTTCAAGCAGGGAGGCCACTTAAAGTGACGCCCGAAGATGGCACTCTTGTCCACATCTCTCATGCATCGCTTGGAGATTGTAA
AGGAAAGAAAGGAGAAGCTGTGACTCTGAATGTGAAGGTTGGGGACAAGAAGTTTGTCATGGGAACTCTTTTGTCTGAGAGCATTC
CTCAGACTTGCTTTGATATGTTATTCGATCAGGAGTTTGAGCTTTCTCACAACTGGGGAAAAGGAAGTGTCCACTTTGTTGGATTC
CAATGTCCCAACAACAAAGATGATGAGGGAGGAGAAGACTTTTCTGATTCAGAGGAAGAAGAGGAAGAGGAAGTTGCTGCCACTGT
TGCAGCTAATGGGAATGCTGCAAAGGGCGTAACAAAACCAAAGCCTGAAGCAGATGATTCTGATTCTGAAGGAATGGATGAAGATG
GTTCTGATGATGAAGATGATTCAGAGGAAGAAGAGGAGGCTCCTAAGGCTGAAACAAGAAGAAAGAGAGCACATGAAGTCGCACCC
GGACCCAAGACACCTGTGTCTGCGAAGAAGGCCAAAGCAGAAGCTACTCCCAAGAAAACAGAGGAGAAGAAGAAAGGTGGACCTGC
AACCCCCCACCCGGCAAAGAAAGGTGGAAACACTCCCGCAACTGCAACGCAGAGCCCAAAGTCTGCAAGTCAAGTCTCATGTGGTT
CATGCAAGAAGACATTCAACTCATCGAACGCACTTGAGTCTCACACCAAGGCCAAGCACTCTGCTACCGCCAAGTGAAGTGGTTTC
CTAAGAGTAACAACTTCCGCTGTTTTGGATTTAGTTGGAGACTTATCTTTTTGAACTTTGGCTGTAGTCTTTTTGAAACCTCTCGG
ATTTGTATTTACCAGTTACCGATATCTTTCAGTATTCTTTCTTAGTTACTTACCCGTTCTAAATTTCAACAAATTAATATGCGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002875683 hypothetical protein ARALYDRAFT_484880 [Arabidopsis lyrata subsp. lyrata]7281e-074
NP_566872 histone deacetylase HDT1 [Arabidopsis thaliana]5882e-058
AAB70032 putative histone deacetylase [Arabidopsis thaliana]5882e-058
NP_001190012 histone deacetylase HDT1 [Arabidopsis thaliana]5836e-058
Q6V9I6 RecName: Full=Histone deacetylase HDT1; AltName: Full=Histone deacetylase 2a; Short=HD2a; AltName: Full=ScHD2a4797e-046

Swiss-Prot top hits (Blast detail)Scoree value
Q9FVE6 Histone deacetylase HDT17455e-078
Q6V9I6 Histone deacetylase HDT14793e-047
Q56WH4 Histone deacetylase HDT23639e-034
Q9LZR5 Histone deacetylase HDT33092e-027
Q9M4U5 Histone deacetylase HDT22992e-026

TrEMBL top hits (Blast detail)Scoree value
B9HQL3 Histone deacetylase5862e-058
A9P996 Putative uncharacterized protein5834e-058
A9P950 Putative uncharacterized protein3882e-035
A9P9Y3 Putative uncharacterized protein3882e-035
B9MYK2 Histone deacetylase3882e-035

Arabidopsis top hits (Blast detail)Scoree value
AT3G44750.1 HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding7454e-079
AT5G22650.1 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase3711e-035
AT5G22650.2 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase3711e-035
AT5G03740.1 HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding3091e-028
AT2G27840.1 HDT4; histone deacetylase2185e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
65  33%
 
95  33%
 
83  20%
 
111  7%
 
181  7%

Unigene MembersMember information