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Information for unigene UN23440

FASTA Sequence
Unigene ID: UN23440Length: 2051 SSR 
GGAACAAAATGGGGAAGAAAAGAAAGCACAGCGAGACAGAAGCGGCGGCGCCGGCGAAGAAGGACGACTCTGCTCCGGAGAGACCT
AAAAGAACTCTATTGGGTTGGAAAGACAAGAACGAAGATGCTGAGGAACCTAAAGCAGTGTCTGCGCCTGGGTTCAGGAACAAAGA
GAAGGTTCTCGTTACTTGCTCCCGACGTATCAGTTTCAGATACCAACACCTGATGTTGAACATTGTGTCGCTTCTCCCTCACTGTA
AGAAAGATAGTAAGGTTGAAGCTAAGAGCAGTAAAGGCGCCACTCTTAATGAGCTTGTTGAGCTTAAGGGCTCTTCTTCCTGCTTG
TTCTTTGAGTGTAGGAAGCATAAAGATCTTTACATGTGGATGGTTAAGTCTCCTAGTGGTCCCTCTGTTAAGTTCTTGGTTAATGC
TGTTCACACAATGGAGGAGCTGAAACTCACTGGAAACCATCTGAAAGGGTCGCGCCCTCTCTTGACCTTTTCTTCCAATTTTGATA
AAGATGTACACTGGAAGCTTTTGAAAGAGATGTTAACACAGTTATTTGGAATCCCCAAGGAACATAGAAAGTCAAAACCTTACCAT
GACCATGTGTTTGCTTTCTCAATTGTTGATGACCATATATGGTTCCGTAATTACCAGATATCGGTACCTCATAACGAGGCAGACAA
GGTTGCAAGAGGTGGTCTTGATAAAATGACCCTTGTCGAGGTTGGTCCAAGGTTCTGTTTAAATCCGATTAAGATCTTTGGAGGAA
GCTTTGGAGGTCCAACTCTTTACGAGAACCCATTTTACGTTTCTCCAAACCAGATCCGAGCATTGGAGAAAAGAAATAAAGCTGGG
AAATTTGCAAAGAAAATAAAGGCAAAAACGAGAAGAAAGATGCATGAACTCTCTAACCCATTGGAGCCTGATGAGTTTGTAGACAT
GTGGAAGGATGAATGAATGATAAAAAAGGTCAATCAAGTCATATAAACTTCCTAGTTCACATTTTTGTCTCTAATGTTCCTTGTTC
TGTTTTCATCTCTCCCTCTTATGCATCAAAATTGTGTACTGTTTTATTTGCAATATAAAGTGCTTTTGCTTCTTCATTGATGTAAC
ACTAAAGATGCTATTTACACAGAGGAAGTAGGTAAAAAGTAAAATGCAACAAAGACAAAAGAACCAACTCAACAACTGAATCAACA
AAGAAGAAGAGATTAACGTGAATTAGCGAGAGCCCAGTTAGCTTCACTTCCTCTCCTAGGAATGGCATTGACCTTACTACAAGCAT
CCACTTTGAAGTTAGCTCCACATATCACACCTTCACTGTCAATCCTCTGCATCGCCTTCATCTTGTTCTTCGGATGCTCAAAGCTC
TTAAGCCCCGTCTCACTGTGAAACATACACCCAGTAGGGAAAGGAGCAAATGACTTGGCACATCCTTGCTTTATAATCTTCACATC
ATCAGACATCACAACAGACCCGTCAGCGGAGATTCCCCAGTAAAGACTCTCTCCTCCATCAGAGCTCAGAGCTGAGAAAACAGAGG
AGGTTTGAGTATCGTAGACGACAAAGGCGTAGCTTCCTTCTAAACCTCTGAGGACTTGATCTGCTGGGTAAGGACCACGATCACGG
AGTGTTCTGTAAGCTTCGATCACAAACATGGCCTCGTTCGTGTTCTTCCCCGTGAGCCCGTACTGTCGGTTCAACGTGCAGAGATT
GCTTAACCTCCCAAGAAACATACAGTAGACTCCGTCTATCCCACAGAACAACCTCTGGCGAAGAGAATTGTTAGGGCGGGAGTAAG
CTAAGACGGCAGAGTCTCCAAAGTTCATGGAGAAAGCGGTGTCCTTGTGGAGGGAGAGGAAGTCGGAGAGAGTATCTCCGGGAAGT
TTTGGGGTTTTGCCGGAGAAATGAGACGCCGGGCTGTTGAGCTCCTCCGGTGGGTGAGCAAACGCTTTCTGAAATATTGCCAACAT
TCTGTTTCTTCTTTGTTTGATCAAAGTTCGAATCTTTTGTTGTTTGGTTTGTTGTTGTTGTTGTGATGATCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002885088 brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]15501e-169
XP_002891721 brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]15438e-169
NP_564618 Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]15151e-165
NP_566514 ribosomal RNA processing brix domain-containing protein [Arabidopsis thaliana]15033e-164
AAL25537 AT3g15460/MJK13_12 [Arabidopsis thaliana]15008e-164

Swiss-Prot top hits (Blast detail)Scoree value
Q4QQT6 Ribosome biogenesis protein BRX1 homolog6535e-067
Q08235 Ribosome biogenesis protein BRX16132e-062
Q9HGL6 Ribosome biogenesis protein BRX1 homolog5756e-058
Q9VZE6 Ribosome biogenesis protein BRX1 homolog5675e-057
P34524 Ribosome biogenesis protein BRX1 homolog5523e-055

TrEMBL top hits (Blast detail)Scoree value
Q9C928 Putative uncharacterized protein At1g5293015159e-166
Q9LE16 MJK13.12 protein15032e-164
Q93Z54 AT3g15460/MJK13_1215005e-164
B9HZX2 Predicted protein14612e-159
B9SUS1 Ribosome biogenesis protein brix, putative14593e-159

Arabidopsis top hits (Blast detail)Scoree value
AT1G52930.1 brix domain-containing protein15155e-168
AT3G15460.1 brix domain-containing protein15155e-168
AT3G15450.1 unknown protein12216e-134
AT4G27450.1 unknown protein9619e-104
AT3G15450.2 unknown protein9214e-099

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
68  27%
 
114  13%
 
96  20%
 
1012  40%

Unigene MembersMember information