RadishBase

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Information for unigene UN23447

FASTA Sequence

Unigene ID: UN23447	Length: 1234	SSR	SNP
GGACAGCCATACCAGATGTAGCCGATAATCAGTTATCTTCATCTCTTCTGCTCTGAACATTGAAGATATCGATCGAATAGTATTCA GAGACACAACAACAGCTTTTGTCTTTGCATCTATGGCGTCGATGCCGACGATCAAACTTGTTCTCCTAGTCTGCTACGTTTCTCTT CTCTGTTTTGTATCATCATCATCATCACCTGATCTTTCTGGAATATCTAAACCATCTTCTTCGCAGAAAGTCTCGCTGGGACTGTA CTACGAGTCTCTATGTCCATACTGTTCTTCCTTCATAGTAAACCACCTCACAAAGCTCTTCGAAGACGATCTCATATCAATCGTCG ACCTCCATCTGTCTCCCTGGGGCAACACCAAGCTCCGCTCCGATAATGCCACCGTCGTTTGCCAGCACGGTGCATATGAATGCTTC TTGGACACGGTAGAAGCTTGTGCGATTGATGTTTGGCCTGAATTGAGCGATCATTTCCCGTTCATTTACTGTGTTGAGAGTTTGGT GATTGAACACAAGTACAAAAAGTGGGAGACTTGTTATGAGAAGCTCAATCTGAACTCAAAACATGTATCGGATTGCCTCAGCAGTG GACATGGGAAAGAGCTTCAGTTGCAGTATGCTGCAGAAACTAGTGCACTTGAGCCGCCTCATAAATACGTTCCCTGGGTTGTCGTG GATGGTCAGCCACTTTATGAGGATTATGAAAACTTCATAAGCTACATCTGCAAGGCTTACAAAGGTAACAAACTGCCTGGAGCGTG TGCCAAATATTCTTCCATCCGTAGTGTCAAAGTGAATCGCTTCCCTCTGGTTTGCCGGAATGGAGTCTATACGATGTGGGATTTGT TGGAACGTATCAAAACCTCTTTGTTGTCATTCGTCACAGGCCTGCTATAAACACCTTGTCTTGCTGTTGTGCTGTGTAGCATGATA CCCTGAAAAGCTTATATAGATTTCTTAGTTATGATGAAGATGTATGGTTTACATATCAGAATCCATGTTTGTTGGGTTGTGTCAGT GACCTCAAGTCTTGTGATAATAAATGGAACAGTTTGTTTTCCTCTGGTGACCTTCTGATTCGGTCCAAACTGGTCATGCACCGGAT AACATCAGTAGGAGAGGAGACTATTAGAATTTAAGATAGAATAGTAAAGTGAGGACCGTGACCCACTACTCATTTCGACGTTGACC ATATGCAATAATAATTTATAATTTTGTACG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002889632 hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata]	1126	9e-121
NP_563779 GILT domain-containing protein [Arabidopsis thaliana]	1099	1e-117
AAF82212 Contains similarity to an unknown protein F7A7_100 gi\|7327817 from Arabidopsis thaliana BAC F7A7 gb\|AL161946. ESTs gb\|N65842, gb\|F19836 and gb\|AI993679 come from this gene	1091	1e-116
XP_002275283 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]	762	1e-078
XP_002313228 predicted protein [Populus trichocarpa]	758	4e-078

Swiss-Prot top hits (Blast detail)	Score	e value
P13284 Gamma-interferon-inducible lysosomal thiol reductase	267	2e-022
O17861 GILT-like protein F37H8.5	247	3e-020

TrEMBL top hits (Blast detail)	Score	e value
Q93VQ6 At1g07080/F10K1_15	1099	8e-118
Q9LMK1 F10K1.21 protein	1091	7e-117
B9HNA5 Predicted protein	758	3e-078
A5AXM4 Putative uncharacterized protein	754	9e-078
C6TCF1 Putative uncharacterized protein	733	2e-075

Arabidopsis top hits (Blast detail)	Score	e value
AT1G07080.1 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	1113	1e-121
AT5G01580.1 OSH1 (OAS HIGH ACCUMULATION 1); catalytic	553	1e-056
AT4G12900.1 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	467	9e-047
AT4G12890.1 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	454	3e-045
AT4G12960.1 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	421	2e-041

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	5			21%


9	9			38%


7	9			38%


6	1			4%

Unigene Members	Member information